Gene detail

Gene detail information of Glyur000353s00015525

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G09760.1	0	Plant invertase/pectin methylesterase inhibitor superfamily
NR	XP_004502918.1	0	PREDICTED: probable pectinesterase/pectinesterase inhibitor 51-like [Cicer arietinum]
COG	YP_004318102.1	5.00E-63	pectinesterase [Sphingobacterium sp. 21]
Swissprot	tr\|Q9LXD9\|PME51_ARATH	0	Pectinesterase 51 (Precursor)
trEMBL	tr\|G7JBH5\|G7JBH5_MEDTR	0	Pectinesterase/pectinesterase inhibitor {ECO:0000313\|EMBL:AES72835.2}

Sequence

Transcript Sequence

>Glyur000353s00015525.1
ATGACCACACATCTCAGAATCAGAAAACCCACTAAACCCATCCCAATCTCCAGATCCACCCTCTTCATCACCCTCACCATGACAATATCCCTCCCTTTACTCTTCCTCTTCATCCTCCTCTCCCACTCCTCCGCCACCCTCCACCATCACAACCACACGCGCACGCGCACACACACACTCCTCCCCGACCCCTCCGCAGAGATCCAACAAGCCTGCAAGGCCACGCGCTTCCCTCACCAATGCCACTCCTCCCTCTCCCAATCCAATCTTCCCCCAAACCCCACCCCGCTCCAAATGATCCAATCCGCAATTTCACTCTCCTCCCAAAACCTCCACACCGCCCGATCCATGGTGAAGTCCATCCTGGACGCCACCGCAGACAATCTCACCCGCACTCGCACCACCACAGCCTCCAAGAGCTGCCTCAAGGTCCTCCACTACTCCCAATACCGAACCTCCCTCGCCTCCAACGCCCTCCCACGTGGCAAAACCAAGGACGCACGTGCCTGGATGACAGCCGCATTGTCCTACCAGTACAGCTGCTGGTCCGGCCTCAAGTACGTCAACAACACCTCATTGGTCTCCGAAACGATGTCGTTTCTCGACTCCCTCACATGCCTCTCCAGCAACGCTCTTAGCATGATGGTCTCCTACGACCTCTTTGGAAACGACACCGCTTCGTGGAGGCCGCCACTAACGGAGCGTGACGGGTTTTGGGAGGGGTCCGGGTCGGGTGGCGTCGGGTCCGGAATGTCGGTGCCGGTGAAACTGACGCCGGACGTTACGGTGTGTAAGGACGGGGGAAACGGCGGGTGTAATTACCGGACGGTGCAGGAAGCGGTTGATGCGGCTCCGGATGACGTCGGCGTTGGGGAACGGAGGTTCGTGATACACATAAAGGAAGGGGTTTATGAGGAGAGGGTTAGGGTTCCGTTGAGGAAGAGGAACGTGGTGTTTTTGGGTGATGGCATGGGTAAGACCGTCATCACGGGCTCTGCAAACGTGGGGCTACTGGGGATGACTACCTATGACACTGCCACCGTTGGGGTTCTTGGGGATGGATTCATGGCAAAGGATCTCACGATCCAAAACACGGCAGGTCCTGATGCTCACCAAGCAGTAGCCTTCAGATCAGACAGTGATCTTTCCATCATTGAGAACTGTGAATTCATAGGCAATCAAGACACTCTCTATGCTCATTCCCTGCGCCAATTTTATAAATCTTGCCGAATCCTGGGCAATGTGGACTTCATCTTTGGAAACTCAGCATCAATCTTCCAAGACTGCGAGATCCTAGTCCGGCCCAGGCAAGCCAGGCCGGAGAAGGGGGAGAAGAATGCCATTACAGCACATGGCAGGACAGACCCTGCTCAGTCAACAGCTTTTGTTTTCCAGAACTGCTTGGTTAATGGTACTGAGGAATACATGGCATTGCATAATAGCAAGCCTAAAGTACACAAGAACTATCTGGGGAGGCCATGGAAGGAGTATTCCAGAACAATTTTCATTCATTCATTCTTGGGAGCCCATATCACACCACAGGGTTGGATGCCGTGGAGTGGGGATTTCGCTCTGCAGACACTTTACTATGGGGAATTCGAGAACAATGGACCTGGTTCTAATTTGACTCAGAGGGTGCCCTGGAGTAGCCAGGTCCCTGCGGAGCATGTGTTCACGTATTCAGTGCAGAGTTTCATTCAAGGAGATGATTGGATTCATCATCTCAGTCATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00353	4397	6760	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0042545 cell wall modification

cellular_component
GO:0005618 cell wall

molecular_function

GO:0004857 enzyme inhibitor activity

GO:0030599 pectinesterase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000353s00015525.1	PF04043.10	PMEI	65	214	6.10E-18
Glyur000353s00015525.1	PF01095.14	Pectinesterase	260	569	3.70E-121

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.010
SRR1783600	control	9.634
SRR1783602	moderate drought stress	5.107
SRR1811619	moderate drought stress	4.963

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.834
DRR006520	Root Summer glycyrrhizin high producing strain	3.798
DRR006521	Root Winter glycyrrhizin high producing strain	1.227
DRR006522	Root Winter glycyrrhizin high producing strain	1.292
DRR006523	Root Summer glycyrrhizin low producing strain	3.420
DRR006524	Root Summer glycyrrhizin low producing strain	3.427
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.688
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.806

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.896
SRR2868004	Drought Stress (root)	3.028
SRR2967015	Control (root)	2.716

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.751
SRR9715740	Leaf	2.010
SRR9715741	Leaf	1.647
SRR9715739	Root	3.921
SRR9715742	Root	2.877
SRR9715743	Root	2.178

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.512
SRR8749028	MeJA induced 9h	0.423
SRR8749029	MeJA induced 9h	0.054
SRR8749030	Uninduced	0.063
SRR8749031	Uninduced	0.022
SRR8749032	Uninduced	0.070

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.308
SRR8400027	Control - Root	5.480