Gene detail

Gene detail information of Glyur000353s00015524.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18660.2	0	plant glycogenin-like starch initiation protein 1
NR	XP_006581757.1	0	PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like [Glycine max]
COG	YP_769553.1	3.00E-21	glycosyl transferase (sulfolipid biosynthesis) protein [Rhizobium leguminosarum bv. viciae 3841]
Swissprot	tr\|Q9LSB1\|GUX1_ARATH	0	UDP-glucuronate:xylan alpha-glucuronosyltransferase 1
trEMBL	tr\|K7KV68\|K7KV68_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G15690.2}

Sequence

Transcript Sequence

>Glyur000353s00015524.1
GAAGATTTATACAAAAGAAGACTACCAAGAAGTAAAGTGAAGGATGTAGAGAAGCCTTTCCACTTATCTATCCAAGATAGAAGCTCAAGATGCAAGTTTTCTTTCTTGAAACTTATCCTACTGATAACCATTTGCGGCACTTTTGTAATGCTCTTGTACTCTCCAGAGGTTTACAATACCAACCATTTATCAAGCTCTGGCTCTCGGTGGATATGGGGTGGCTTAGATCCTCGATATATATCGAATATAGAGACTGAATGGGATGATATAATGAAAATCACAGAGAAGCTAACAGGAAAAGATGAGTTCCAAGGCATTGGACTTGTAAATTTCAACAAGACTGAAACTGCGAAGTGGAAGCATCATTTTCCTGATGCCACACATGTTGTTCTGCCTCTGGAGTATGCTGCAAACAATGTGACATGGGAGTCTCTATACCCAGAATGGATTGATGAGGAAGAAGAAACTGAAGTTCCTGTTTGCCCTTCTCTACCGAGTCTTAGATCTCCTGGTACAAGACTTAACCTCATTGCTGTCAAGCTTCCTTGTCGGAATGGGGGGAATTGGTCTAGAGATGTTGCTCGTTTGCACCTTCAGCTTGCAGCTGCTGCACTTGCAACCTCTTTCAAAGGCAATTACCCCTTATATGTGCTCTTCATTGCCAACTGCTTTCCAATACCAAACCTGTTTACCTGCAAAGAACTGATTGGACGTGAAAGGAATGTGTGGTTATACAGACCAAACTTGAGTGTTTTGAGAGAAAAAGTCCAGCTTCCAGTTGGGTCTTGTGAACTTGCACTTCCTATGAGAGGCAAAGAACTGGTATACAATGGAAATGCTCCCAGAGAAGCCTATGCAACAATTCTGCATTCAGCTCATGTTTATGTTTGTGGGGCTATAGCTGCTGCACAGAGCATTAGGATGTCTGGATCAACTCGAGACCTTGTAATACTTGTTGATGAGACAATCAGCAGCTATCACAGAAGTGGTTTGGAAGCAGCAGGGTGGAAGGTCAGAACAATCCAGAGAATCAGAAACCCAAAAGCTGAAAAAGATGCCTACAATGAATGGAACTACAGCAAGTTCCGGTTATGGCAGCTGACAGATTATGACAAGATAATATTCATTGATGCAGATTTGCTCATACTCAGAAACATAGATTTTCTATTTGGAATGCCAGAGATCACTGCTACCGGCAACAATGCCACTCTTTTTAACTCGGGTGTGATGGTGGTTGAGCCATCAAACTGCACATTCCAGCTCCTGATGGATCATATAAATGAGATTGAGTCCTACAATGGAGGGGATCAGGGGTATTTGAATGAAATATTCACATGGTGGCACAGGATACCAAGGCACATGAACTTCTTGAAGCATTTCTGGATTGGTGATGAGGAAGAGAAGAAGCAAATGAAGACCATGTTGTTTGGTGCTGACCCTCCAATTCTCTATGTTCTTCACTATCTAGGCATGAAGCCATGGTTATGCTTCCGGGACTATGATTGCAACTGGAATTTTGATATTTTTCATGAGTTTGCAAGTGATGTTGCACATGCAAAGTGGTGGAAGGTGCATGATGCAATGCCTGAGCTTTTGCAGCAGTTTTGCCTGTTGAAGTCAAAGCAGAAGGCACAGTTGGAGTGGGATCGTAGGCAGGCTGAGATAGCAAACTACACTGATGGGCATTGGAGAATCAAAGTTAAAGATCACCGTTTGAAGAAATGCATAGATAATTTGTGCAACTGGAAAAGCATGTTGCGGCACTGGGGAGAGACTAATTGGACAGATGATGAGTCTTTAACTCCAACACCTCCCACCATTACTACATCATCTCTTTCTGCTTTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00353	1047	3391	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0009834 plant-type secondary cell wall biogenesis

GO:0045492 xylan biosynthetic process

cellular_component
GO:0005794 Golgi apparatus

molecular_function

GO:0015020 glucuronosyltransferase activity

GO:0016757 transferase activity, transferring glycosyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000353s00015524.1	PF01501.15	Glyco_transf_8	287	496	2.80E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.733
SRR1783600	control	2.804
SRR1783602	moderate drought stress	1.419
SRR1811619	moderate drought stress	1.462

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.112
DRR006520	Root Summer glycyrrhizin high producing strain	3.014
DRR006521	Root Winter glycyrrhizin high producing strain	0.444
DRR006522	Root Winter glycyrrhizin high producing strain	0.419
DRR006523	Root Summer glycyrrhizin low producing strain	2.859
DRR006524	Root Summer glycyrrhizin low producing strain	2.942
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.403
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.442

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.017
SRR2868004	Drought Stress (root)	2.840
SRR2967015	Control (root)	2.065

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.463
SRR9715740	Leaf	0.440
SRR9715741	Leaf	0.210
SRR9715739	Root	0.160
SRR9715742	Root	2.959
SRR9715743	Root	1.790

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.359
SRR8749028	MeJA induced 9h	0.173
SRR8749029	MeJA induced 9h	0.165
SRR8749030	Uninduced	0.069
SRR8749031	Uninduced	0.062
SRR8749032	Uninduced	0.085

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.585
SRR8400027	Control - Root	6.263