Gene detail

Gene detail information of Glyur000352s00022304

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36860.1	0	LIM domain-containing protein
NR	XP_004509228.1	0	PREDICTED: protein DA1-related 1-like isoform X1 [Cicer arietinum]
COG	YP_007039105.1	3.00E-07	hypothetical protein BN6_49630 [Saccharothrix espanaensis DSM 44229]
Swissprot	tr\|Q8W4F0\|DAR1_ARATH	0	Protein DA1-related 1
trEMBL	tr\|V7CCS6\|V7CCS6_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW28002.1}

Sequence

Transcript Sequence

>Glyur000352s00022304.1
TTCCGGTATCTCACTCACTCACACACACAGTGACACATAGGAAGAGAGAAAGAGAATTGTAACCATTACTATTACTATATGGTTGAGTTGACTGTGTGCTAATGGGAATCAGAAATTGCACTTGAATTGGGATTCATCTGATACCTCTGTCTCTCTGCTGATTCCTAATCTTTTCCGGTATAAATTTTCTTACCTACTTGAGGGGCTTCGTTTCAAGAAAAGGTTTGCCAACCTGCAGCAAATAGGATTGCATGGGTTGGTTTACCAAGTTGCTTAAGGGTTCCAACCATAAATCTTCAGGACNACACTATCATGGGAAATATGGAGATGACAGAAATTCGAATAATCATGATAATTCAGCGGATGATTTGACTGATATNGAGAGAGAAGAAATTGATCGTGCTATAGCGCTCTCTCTTTCAGAGGAAGATCATAAAGGGAAAAAAGTTATTGAGGATGACTCTCAATCTGAAGATGAAGAACTGTGTCAAATTGATGAGGAGGAAGATGATCATCTTGGTGATGTTCAACAAGATGAAGATGACCATGTTGCTAAAATTCAACAGGATGAAGACAAAAATCTTGATGAAGTTCAACTTGAGGAAGATGAACTACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATCGGTTCTCCTCCACGATCTTACACTGATTCTTTATTTCAACCTTTTTCACACCTCTTCCCACCTGTATACAGAATCTGTGCTGGCTGCAATGCCGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGGGCTGTGTGGCATCCAGAATGTTTCTGTTGCCATTCTTGCAAACTTCCAATCACTGATTACGAGTTTTCCATGTCTGGAAATCGCCGTTACCATAAATCGTGCTATAAGGAGCTGCATCACCCAAGGTGTGATGTTTGCAAGAACTTTATCCCACCAAATTCAGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCACATGAGCGTGATGGAACTCCTCGTTGTTGTAGCTGTCAAAGAATGGAGGTCATGCAGTCAACAGACACAAAATATCTGTTGCTTGATGATGGTCGAAAGCTGTGCCTGGAGTGTCTCGATTCAGCTATTATGGATTCTCATGAATGCCAACCTCTGTATCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAAATAGAGCAGCAAATACCTATGCTATTGGTTGAGAGACAAGCACTGAATGAAGCCATGGAGGGGGAAAAGAATGTAAACGGTCATCACCACTTACCNGAAACTAGAGGACTTTGCTTGTCAGAAGAGCGAACTGTCTCCACTATTTTAAGGAGACCAAGGATAGGTGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGGCTGATTCGTCGCTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGGTTATTGACAGGATCAATCCTGGCTCATGAAATGATGCATGCTTGGCTTAGACTTACAGGATATGGAAATCTGAGGCCAGAAGTTGAAGAAGGAATTTGCCAAGTCTTGGCGCATATGTGGTTAGATTCAGAGATCTATTCTGTCTCTGGAATTGATGGATCATCATCATCTTCATCTTCATCGTCTTCATCATCATCAACTTCACCTTCGTCCTCTTCATCATCAAAGAAGGGTAAGCGGTCTGACTTTGAGAAGAAACTTGGTGAGTTTTTTAAACACCAGATTGAGTCAGATAGCTCACCAGCCTATGGAGATGGATTCAGAGAGGGTAACCAGGCCGTGCTCAAGTATGGGCTTAGAAGGACCCTTGACCATATCCGAATGACTGGAAGTTTTCCATATTGAAATTATTATATATATATTTCTTACTTTTACATCAACCAATATTTCAGCTTTGTCATATAAATTATTATAGGCACCAAATATTCCAAATTCACCCTACTCTACACAAAATAAGGAATGAAAATGCTCATGTTAGTGTGCAGTTGCTGTATTTTTTTTGGTGAAATTGTGTTAATTAGTGTAATCTCTGGTTAAATATTGGCAGTTTGGCACCTCATGTTATATGTGTCACAAAAATACCTTATAGCAGTTGAAATTATAAAAACAGCTGATGCAATTACAGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00352	165103	171137	+

Gene family

Gene family	subfamily
Transcription Factors Family	LIM

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000352s00022304.1	PF00412.17	LIM	158	212	1.00E-08
Glyur000352s00022304.1	PF12315.3	DUF3633	310	531	2.20E-101
Glyur000352s00022304.2	PF00412.17	LIM	158	212	1.00E-08
Glyur000352s00022304.2	PF12315.3	DUF3633	307	526	2.00E-103

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.662
SRR1783600	control	7.542
SRR1783602	moderate drought stress	8.117
SRR1811619	moderate drought stress	8.263

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.642
DRR006520	Root Summer glycyrrhizin high producing strain	8.527
DRR006521	Root Winter glycyrrhizin high producing strain	9.471
DRR006522	Root Winter glycyrrhizin high producing strain	8.937
DRR006523	Root Summer glycyrrhizin low producing strain	16.551
DRR006524	Root Summer glycyrrhizin low producing strain	15.972
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.348
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.271

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.580
SRR2868004	Drought Stress (root)	15.778
SRR2967015	Control (root)	15.737

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.270
SRR9715740	Leaf	12.284
SRR9715741	Leaf	13.083
SRR9715739	Root	2.649
SRR9715742	Root	9.244
SRR9715743	Root	7.844

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.420
SRR8749028	MeJA induced 9h	5.894
SRR8749029	MeJA induced 9h	3.517
SRR8749030	Uninduced	3.266
SRR8749031	Uninduced	0.955
SRR8749032	Uninduced	0.768

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.284
SRR8400027	Control - Root	12.017