Gene detail

Gene detail information of Glyur000352s00022300.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G23740.2	0	nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding
NR	XP_003548905.1	0	PREDICTED: histone-lysine N-methyltransferase SUVR5-like isoform X1 [Glycine max]
COG	YP_003280830.1	8.00E-13	nuclear protein SET [Comamonas testosteroni CNB-2]
Swissprot	tr\|O64827\|SUVR5_ARATH	0	Histone-lysine N-methyltransferase SUVR5
trEMBL	tr\|K7MHC3\|K7MHC3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G25795.1}

Sequence

Transcript Sequence

>Glyur000352s00022300.1
ATGGAAGTATTTCCTTGTTCTGGTGTTCCGTATGCTGGAGAATCCGATTGCTCTCAGCCAAATCCAGGAATAACTTATGTATACAAGGGAGAACCTAACTGGCCTGAAAATGGCGAACAGGTCAACTTGGAAGATGATCAGCTGAATGACTCGTTACTTAAGATGGAAGGGCCTAAGGTAGAAAGACAAGGTCAAATGCAACAACAGATTGCTTGTGAACTCTTTACTAATTCAGATTGCCAATACAATGGAGCTTCATGTTGTGACAATCTAGTGGAAGATCAAAAGGAATCCTGCAGTTTGCATGATGCTGAAGACGATGAAATAAATGAACCTTGCTTAACCTCTGAGAACTCTCTCTCAATTGTGGATGTGATTGAAAGTGAATCCCCAAATAACAATAGGGAAGGAGAATTGTCATTTCCTGATCCTACTTGGCTGGAGGAGGACAAGTCTGTTGCATTGTGGGTCAAGTGGAGAGGGAAGTGGCAGGCCTGCATCAAATGTGCAAGGGCTGACCGGCCATTATCAATTTTGAAAGTAAAACCAACTCATGACCTGAAGCAGTATTGTGTCATTTTTTCGCTGCACACAAGGAATTATTCTTGGGCTGATATGCTGCTTGTTCNACCAATTGATGAGTTTCCCCAGCCTATCGCATATGAAACTCATCAGGCAGGATTGAAAATGGTAAAAGACTTGACTGTTGCTCGACGGTTCATAATGCAAAAGCTAACCATTGACATGCTGAACATTGTTGATCAGCTTCATTCTAAGGCTTTGATAGAAGCTGCCCATGATGTGATGATTTGGAAGGAATTTGCGATGGAGGCTTCTCGTTGTAGTGGTTATTCAGATCTTGGAAGAAAGCTTCTAAAGCTGCAAAATAGCATAGTGCAGCAGTACATAAATGCTGACTGGATACTACATTTGTCTAACTCTTGGGCCGAACGATGCCAGAATGCAAATAGTGCTGAATCAGTGGAGCTTCTGAANGAGGAGTTGTTTGATTCTATTTTGTGGAATGATGTCAACACTCTCTGTGATACACTGGTACAACCAAAATTAAGTTCTGAGTGGAAAACCTGGAAGCATGATGTAATGAAATGGTTTTCCACATTGCCTTCCTTTTCTAGCAGTAAGGACATGCAGCAGCAGACCTCTGATGGATTGTACCAAGTAAGCCTTCAGGTTGATAGAAAAAGGCCCAAACTTGAAGTTCGTCGTGCAGATACACATTCTTCGCTGGTGGAAACCAAGGATTCCGATCACTCTATTACTCTTGAGACTGACCCAGGTTTCTTTAAGAATCAGGACTCATTAAGTGCATTAGCAGCTGAGACTTCTAAACAGGAAGATGTTTGGGAGGTACCTGTGGTAACTGATTTACCTAGTAATTTGACCAATGAATGGAATGAAATTATAGTTGAGCCTGTTGATTCTGAGATCCTGCTCAACAATGGAATGAAATCAAGAGCTATGAATGAATTGGCTGGTCAAGAATTGGTAGAAATTGGTACTAAGAGTCGACAATGTAGAGCTTATATTGAAGCCAAGAGAAGGCGGTGTGTGAGATGGGCAAATGATGGTGATATATACTGTTGTGTGCATTTGTCATGGCGTTTTTTGGGAAGCTCAGGTAAAGCTGAAAGACCTGTTACNGTTCAAACTCCAATTTGTGGAGGTACAACTTTTCATGGTACTAGATGTAAGCATCATTCCCTTCCCGGCTCTTCATTCTGTAAGAAACACCGGCCCCATGCTGAAACAGATGAGACATCAAATTTAACCCATAGTAGAGCACTAAAGAGGAAACATGAAGAAAACGACTCTGGTTCAAATGGCTTGATCTGCAAAGACATGGTTTTGGTAAATGCTGAAAGTCCATTGCAAGTAGATCCAGTGTCAGCCATTGATGGTGATCCCTTCCTTGGAATAAACAACTTAGGTGAGAAGGCCATCCTTTCTGGAAATGATCATAATGCAATAGAGGCACATCACTGTATAGGCTCTCCTCCCTATGGTAATGAGAACCCTTGTTTGGAATCACCAAAATTATATTTGTTGTACTGTGAAAAGCACCTACCAAGCTGGCTTAAATGTGCAAGAAATGGTAAGAATAAGATAATATCAGAAGAAGTGTTCACAGATATGTTGAGGGACTGCTGCTCATGGGAACAAAAGGTGAATCTGCATAAAGCATATGCTCTTTTTCACAGGCTATTCAAAAGCATTTTGTCACTAAGAGACCCAGTATCTAGGGAAGTTCAGATCCAATGGGCTTTGACTGAAGCCTCGAAAGATACTAGTGTTGGAGAATTCCTTAATAAGCTGATTAATAGTGAAAAGGATAGAATCAAATTGATTTGGGGATTCAATGATGACANAAATGCATCCTCACTCATGGAAGAACCACCTCTCCTTGCTTCCATAATTAATGACAGCTTTGATAATGAAAATGCCATTAAGTGTAAGATCTGCTGTGCAGAATTTCCTGATGACCAAACACTTGGTAACCATTGGATGAACAATCATAAAAAGGAAGCACAGTGGCTATTCAGAGGCTATGCTTGTGCCATTTGTCTCGATTCTTTTACTAACAAGAAACTATTGGAAATCCATGTTCGGGAGAGACACCATGTGCAGTTTGTTGAACAGTGCTTGCTTCTCCAATGTATTCCTTGTGGTAGCCATTTTGGAAATGTGGAGCAATTATGGTTGCATGTTCTATCAGTTCACCCTATTGAATTTAAGCTGTCGAAAGCTCCTGAGCTGCAAACTTTGCCTACCTGTGAGTATTTTCCAGAAAAACATGAGCAGGGAAATGCAGCTTCTTTGGACAATAATTCTGAGAATCCAGGTGATTTGCGGAAGTTCATTTGCAGGTTTTGTGGGTTGAAATTTAATTTATTGCCTGATCTAGGTCGCCATCATCAAGCTGCTCATATGGAGCGCAAACCAGTTAGCAAGCGCTCTGCAAAGAGGGGAGTTTGTTATTATGCTCACAGATTAAAATCTGGCAGACTTAGCCGTCCTAGATTTAAAAAAGGTTTGGCAGCAGCGTCATATAGGATCAGGAGTAAGGCTAATGCTAATTTGAAGAGACGTATTCAGGCAACAAAGGCACTTGACATGGGGAAAACAACCATACAGCCTCATGCAACTGAGACAGCAAATATCGGTGAATTGGCAGAATATCAATGCTCAGCAGTTGCAAAGATTTTGTTTTCTGAGAGTCAGAAGACTAAACCTCGGCCTAACAATCTTGATATTTTGTCAATTGCTCGCTCTGCTTGCTGTAAAGTTAATCTTAAAGCTTCACTGGAGGAGAAATATGGAATTTTGCCGGAAAGGCTCTATTTGAAGGCAGCTAAACTTTGCAGCGAGCATAACATTCTAGTGAATTGGCACCAGGAGGGGTTCATTTGTCCAAGAGGTTGTAAGGAATTCAAGGACCACAGGCTGCTCTCGCCCTTGGCATCTCTTTCTAATGGTTTCCCAAAGCCAAAATCTATAAGTATATCAGATCCTGCAAGTGATGAGTTGGAGCTGGATGAGTTTCACTACATCATCAATTCACACCATTTAAAATCAGGGTCCTTGCAAAAGGCTATAGTATTATGTGATGACATAAGCTTTGGGAAGGAATCGATTCCAGTGATTTGTGTAGCAGATCGAGAAATTCTAAATTCTCTTCTTAGGCATGGTTCCAATGAACAAGAGATAAATCTCTCTAGGCCTTGGGAGAGCTTTACCTATGTTACAAAGCCAATGTTTGACCAATCACTTGGTCTTGATTCTGAGAGTCTGCAGCTGAGATGTTCCTGCTCNTTTTCTACCTGCTGTCCTGAAACATGTGATCATGTATACCTTTTTGATAATGACTATGATGATGCAAAAGACATATTTGGGAAACCAATGCGTGGAAGGTTCCCATATGATGAAAATGGCCGAATCATATTGGAGGAAGGTTATCTTGTGTATGAGTGTAACCATATGTGCAGATGCAATAAAACCTGTCCAAACAGAATATTGCAGAATGGAATTCGGGTTAAATTGGAAGTCTTCAAAACAGAGAAAAAGGGATGGGCAGTAAGGGCTGGTGAGGCTATTTTGCGTGGCACATTTGTGTGTGAGTACATAGGAGAGGTTTTAGAAGAGCATGAGGCACAAAACAGACACAAAAGATATGGCAAAGAACATTGCAGTTACTTCTATGACATTGATGCTCATGTTAATGATATGAGTAGAATGATCGAAGGACAGGCTCGGTATGTCATTGATGCTACTAGATATGGAAATGTCTCTAGGTTCATCAATAACAGCTGCTCACCCAATCTTGTGAATTACCAAGTTCTGGTAGAGAGCATGGATTGTGAGTGTGCACATATTGGTCTTTATGCAAGTCGAGATATTGCCTTGGGTGAAGAATTGACATATAATTATCAGTATGAGCTTGTGCCTGGAGAAGGATCTCCTTGTCTTTGTGGATCTTCAAATTGCCAGGGAGCCTTTACTAGAACCTCAACATCCGTGCTGTCTCAATAATATTTCCAGATTGCCCAATTTGGGGATCAAATTATTTGCTCAAACATTTAAAGATTCCAATGTGGAAATCATGCCTGCATAGTACTTTGAACAGTTATGATAGTCTTGATATCTCCTAACAGATGAGACAAGTCAAACATCTCATGAGGGCGCAGGCTTGATTGGTTTCAAGTATAATTTGTCAGCTGTCTCTGGCAAACTTCAAGTGATTAGGATTCTTTCCTATGTACATTTTCTCCCACCCCCCTCTAATGTTTTTGTAGCTTAGCGCGCTTTTGTTCTCTTTTCTGTTGCTTTATTCTCTAATTTTTCTCCGCCTAAAAATGCATGTCTTCATGGAATAATTAGGGAATACCCTTTCCTCCCCCCACCAAAACAAGTCTAAGAAAAAGAGACATATCTGAAGTTAGAGATGTCTGGGTTGACAATTGTTATTCTTCTCCC

Protein Sequence

>Glyur000352s00022300.1
MEVFPCSGVPYAGESDCSQPNPGITYVYKGEPNWPENGEQVNLEDDQLNDSLLKMEGPKVERQGQMQQQIACELFTNSDCQYNGASCCDNLVEDQKESCSLHDAEDDEINEPCLTSENSLSIVDVIESESPNNNREGELSFPDPTWLEEDKSVALWVKWRGKWQACIKCARADRPLSILKVKPTHDLKQYCVIFSLHTRNYSWADMLLVXPIDEFPQPIAYETHQAGLKMVKDLTVARRFIMQKLTIDMLNIVDQLHSKALIEAAHDVMIWKEFAMEASRCSGYSDLGRKLLKLQNSIVQQYINADWILHLSNSWAERCQNANSAESVELLXEELFDSILWNDVNTLCDTLVQPKLSSEWKTWKHDVMKWFSTLPSFSSSKDMQQQTSDGLYQVSLQVDRKRPKLEVRRADTHSSLVETKDSDHSITLETDPGFFKNQDSLSALAAETSKQEDVWEVPVVTDLPSNLTNEWNEIIVEPVDSEILLNNGMKSRAMNELAGQELVEIGTKSRQCRAYIEAKRRRCVRWANDGDIYCCVHLSWRFLGSSGKAERPVTVQTPICGGTTFHGTRCKHHSLPGSSFCKKHRPHAETDETSNLTHSRALKRKHEENDSGSNGLICKDMVLVNAESPLQVDPVSAIDGDPFLGINNLGEKAILSGNDHNAIEAHHCIGSPPYGNENPCLESPKLYLLYCEKHLPSWLKCARNGKNKIISEEVFTDMLRDCCSWEQKVNLHKAYALFHRLFKSILSLRDPVSREVQIQWALTEASKDTSVGEFLNKLINSEKDRIKLIWGFNDDXNASSLMEEPPLLASIINDSFDNENAIKCKICCAEFPDDQTLGNHWMNNHKKEAQWLFRGYACAICLDSFTNKKLLEIHVRERHHVQFVEQCLLLQCIPCGSHFGNVEQLWLHVLSVHPIEFKLSKAPELQTLPTCEYFPEKHEQGNAASLDNNSENPGDLRKFICRFCGLKFNLLPDLGRHHQAAHMERKPVSKRSAKRGVCYYAHRLKSGRLSRPRFKKGLAAASYRIRSKANANLKRRIQATKALDMGKTTIQPHATETANIGELAEYQCSAVAKILFSESQKTKPRPNNLDILSIARSACCKVNLKASLEEKYGILPERLYLKAAKLCSEHNILVNWHQEGFICPRGCKEFKDHRLLSPLASLSNGFPKPKSISISDPASDELELDEFHYIINSHHLKSGSLQKAIVLCDDISFGKESIPVICVADREILNSLLRHGSNEQEINLSRPWESFTYVTKPMFDQSLGLDSESLQLRCSCSFSTCCPETCDHVYLFDNDYDDAKDIFGKPMRGRFPYDENGRIILEEGYLVYECNHMCRCNKTCPNRILQNGIRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYIGEVLEEHEAQNRHKRYGKEHCSYFYDIDAHVNDMSRMIEGQARYVIDATRYGNVSRFINNSCSPNLVNYQVLVESMDCECAHIGLYASRDIALGEELTYNYQYELVPGEGSPCLCGSSNCQGAFTRTSTSVLSQ

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00352	102661	110228	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0034968 histone lysine methylation

cellular_component
GO:0005634 nucleus

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

GO:0018024 histone-lysine N-methyltransferase activity

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000352s00022300.1	PF05033.11	Pre-SET	1211	1343	1.50E-14
Glyur000352s00022300.1	PF00856.23	SET	1362	1483	1.70E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.667
SRR1783600	control	1.714
SRR1783602	moderate drought stress	2.739
SRR1811619	moderate drought stress	2.679

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.358
DRR006520	Root Summer glycyrrhizin high producing strain	1.313
DRR006521	Root Winter glycyrrhizin high producing strain	1.018
DRR006522	Root Winter glycyrrhizin high producing strain	0.995
DRR006523	Root Summer glycyrrhizin low producing strain	2.443
DRR006524	Root Summer glycyrrhizin low producing strain	2.470
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.543
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.571

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.613
SRR2868004	Drought Stress (root)	3.208
SRR2967015	Control (root)	2.641

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.542
SRR9715740	Leaf	1.489
SRR9715741	Leaf	3.031
SRR9715739	Root	0.526
SRR9715742	Root	2.400
SRR9715743	Root	2.477

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.471
SRR8749028	MeJA induced 9h	4.387
SRR8749029	MeJA induced 9h	5.418
SRR8749030	Uninduced	3.019
SRR8749031	Uninduced	5.113
SRR8749032	Uninduced	4.208

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.468
SRR8400027	Control - Root	1.974