Gene detail

Gene detail information of Glyur000352s00022297

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G53070.1	6.00E-65	Ribosomal protein L9/RNase H1
NR	XP_003553907.1	1.95E-140	PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Glycine max]
COG	YP_828289.1	4.00E-10	50S ribosomal protein L9 [Candidatus Solibacter usitatus Ellin6076]
Swissprot	tr\|P51334\|RK9_PORPU	1.00E-08	50S ribosomal protein L9, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_00503}
trEMBL	tr\|I1N7M0\|I1N7M0_SOYBN	7.00E-141	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G24670.1}

Sequence

Transcript Sequence

>Glyur000352s00022297.1
GCCGCGCCCTCACTGTCCTTACCGTGCACCTCGCCCCCTGAAGCGCGCTGCGCGCCTTGATCCTACGNGTCCTCACCATAATATTCCTGCACCCTCACACAGTATAGCGCATTCCAACCCCCCCCCATAAAACGAAAACCACGTCCATTCTCAGAGAAAAACCTAACCTCTCCTTCTCCCAGAAGCAGGCGCGGCGCCGCCCCCTCACCTCTCAACCTTTATTCTAATTTTTTCTTACTCCAAATACCGATTTCCATTCTTCTCCTCCCATACCCCAGTGCCCCCTTTCCTCTTCATCAACCTTTCACTCTCACCATCACCACTCTTCATTATCTCTACCAACGGAGCTCATGATACCAGCAAGAATGTGACAAAAGAACAGAAACAGTAGAGAGAGAGCTCCCGTCCTCCGCCGCAAAGCCACCGCCTCGGGCCTCTCCTTTTTTGTGCTGCAAGATAAAAGTGGTGACTGTGATTCCGAATCCAAATCTGAATGGGTTATCTTCAATTTGGCAGACATGGTGTTAGGCAGATCATTAGATTTCGAGATGCCAGTTATGATAGTGTTGTGGTAAACCCACTCTTGTATGCATCTCAAGGACTGCGATACAACAGGAAGCTCCAAGTCATCCTTACAACTGACATAGATAAGCTGGGAAAGGCAGGTGAAACCGTCAAAGTTGCCCCTGGATATTTTCGCAACCATCTAATGCCCAAGCTTCTCGCTGTCCCTAATATCGACAAGTTNGCTTATCTCCTACACGAGCAGCGCAAGATCTATCAACCTACTGAAGAAGGAAAGCAAGAAGATGTTACGCTAGTTAAAGAGTCAAAGGAAGATATGATGAGAGAGTTTGAAAAGGCAGCACTGCGTCTTGATAAAGCTAAGCTGGTCTTGCGGAGGTTAATTGATGTTCAAAAAGCGAAGTTGCGTGCAACAAAAGATGACCCCTTGGAGATACGTTCACCTGTCACAAAAGAAGTTCTTGTGGCTGAGGTGGCAAGACAACTTTGTGTGAGCATCACNCCTGAAAATCTGCATCTTCCATTGCCTTTATCAACAGTGGGAGAATATGAGGTGCCACTACGTTTACCGAGGTCCATCCCTTTGCCAGAGGGCAAGGTTAACTGGATGTTGAAAGTTAAAATCCGGAGTAAATAAATTAATCATCTTGTTGAATCCAAGTTCATAAGGGATGAAAGTTTTGGTTTATACTGATAAATTTGACCTGAGGATTACAGAAGCGCAGCCCTCTTTTAAGCATATTTGCTGTTGGTAGGTGAAATCTCATAGTCATAACATGTTATCAGCATTCCTCTTTATAAAAAACTTCTAGTCAAATATTTCATCTGACCTGCAATTGATTTTGATCATGTATTACTATCCNGTTTTAAACACAGCCCTCTTCCTATATTTACCTCCAATTTGGGACTTTGGTGTACCAATTTGCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00352	53360	57783	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000352s00022297.1	PF01281.14	Ribosomal_L9_N	44	81	1.70E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	44.087
SRR1783600	control	44.301
SRR1783602	moderate drought stress	26.229
SRR1811619	moderate drought stress	25.959

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.961
DRR006520	Root Summer glycyrrhizin high producing strain	36.808
DRR006521	Root Winter glycyrrhizin high producing strain	17.948
DRR006522	Root Winter glycyrrhizin high producing strain	17.426
DRR006523	Root Summer glycyrrhizin low producing strain	22.691
DRR006524	Root Summer glycyrrhizin low producing strain	21.687
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.228
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.103

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.674
SRR2868004	Drought Stress (root)	33.943
SRR2967015	Control (root)	34.596

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.593
SRR9715740	Leaf	28.166
SRR9715741	Leaf	27.597
SRR9715739	Root	15.562
SRR9715742	Root	33.024
SRR9715743	Root	30.542

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	118.255
SRR8749028	MeJA induced 9h	43.970
SRR8749029	MeJA induced 9h	107.137
SRR8749030	Uninduced	31.121
SRR8749031	Uninduced	56.626
SRR8749032	Uninduced	43.885

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.366
SRR8400027	Control - Root	27.329