Gene detail

Gene detail information of Glyur000352s00022293

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G16390.1	1.00E-131	organic cation/carnitine transporter 3
NR	XP_003605381.1	0	Solute carrier family 22 member [Medicago truncatula]
COG	YP_007687303.1	8.00E-16	Arabinose efflux permease [Thermoplasmatales archaeon BRNA1]
Swissprot	tr\|Q9SA38\|OCT3_ARATH	3.00E-180	Organic cation/carnitine transporter 3
trEMBL	tr\|B7FM11\|B7FM11_MEDTR	0	Organic cation/carnitine transporter {ECO:0000313\|EMBL:AES87578.1}

Sequence

Transcript Sequence

>Glyur000352s00022293.1
ATGGCGGCGATTGAGGAGCTTGCTGATTCAACATTAACACGCCAAGCTTTGGACGAATCCAAAGCTACCAATGATGATGAAAGAGTGGTTCCCTCATCGGATGAAATGATAGAGAAAGGTTTNGGAAGATTTGGGTGGGTGGAGTTCATCCAATGCATCCTTGTCTCTTTTGCAATGTACTTTGATGCACAGCAATCATTCATAAGCATTTATTCTGATGACTACCCAACATGGCACTGCACTGACCCCACCACATGCACCTCATCTTCTGATATCTGCAAGATTCCAAAGTCTTCTTGGTCATGGGATGGACCCATTTCAAAGACAATCATATCCCAGTGGGGCCTTGAATGTGCCAGCAACTTCATCACAGGTTTACCCCAATCCTCTTTCTTCATTGGTTGCCTCCTTGGTTCCTTTGCTCTAGCCACCTTGGCTGATACATCACTTGGGAGAAAGAACATGCTCATCCTCTCTTGTATGTCAATGTCCATAGCATCAATCATCATTGTGTTCTCCACCAATGTTTGGATTTACTCAGCTTTTAAATTCCTTATTGGGTTTTGGCGTTCATCAATTGGGACATGTGTTCTGGTTTTACTAACTGAGAAAGTGAGCACAGAGTGGAGGTTCACAGTTGGGATTGTTGAGTACTTTTGCTTCACATTGGGGTACATGTCATTGCCTGGTATAGCTTATGTCAATAGATATAACTCATGGAAAACCCTTTATATATGGACATCGATTCCTGCTATTATTTACTCAATCATTGCTTACTTCTTTGTCNCTGAGTCACCAAGGTGGCTTATTATGCAAGGTAGAGAACAAGAAGCCGTAGCAATGCTTAAAGGGATTTCTACAGAAAATGGTAATGATTTGACAGCAAGTCTATTGAAAAACTCTCCTCCTAAGCAAAAGGCCTCGGTTTTCCAACTCTACTCATCAATAGCAAAGTTGTTTGAGAGGAGTTGGGCTCTTAAAAGAATGGTGGCAATTATGGTGCTTGGTATTGGCATTGGAATGGTGTATTTTGGGATGCCTTTAGCAGTTGGGAACTTGGGGTTTGACATTTACTTGGCTGTTGTGTTCAATGCATTGATGGAAATACCTTCTTGTGTGGCCACCTATTTCTTGGAGAACTGCAGAAGAAAGCCATCTATTCTTGTGTTCTCAGTAGCAAGTGGGTTATGTTGCATAATGTGTGTTGTGGTTGGAAGTGAGCTACAAGGAATTAAGGTGGGGTTAGCATTGGTGTCATTTTTCAGTGCTTGCACAGCTTATAATGTGTTTCTCATATACATTATAGAGTTGTTTCCCACAAGTGTGAGGAACACNACAACATCATTGGTGAGGCAGGCCATTGTGTTTGGTAACATATTCAGCCCTTTTTTGATATCTGCTGGGAGGAAAAATGACTTTTTCTCTTATGGGGTGTTTGGAATAGTTATAGTGCTGTCCTGTTTTACATTGCTCGGTTTGCCAGAGACCAAGGGACTTGCTCTTTGTGATACCATGGATCAACAAGAGAAAAAAGAAAACACCAGTGTAAAACAAGCAACAGGGACAATTAGTGATGTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00352	9071	11860	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000352s00022293.1	PF00083.19	Sugar_tr	112	501	6.00E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.947
SRR1783600	control	7.202
SRR1783602	moderate drought stress	4.554
SRR1811619	moderate drought stress	4.505

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.346
DRR006520	Root Summer glycyrrhizin high producing strain	3.362
DRR006521	Root Winter glycyrrhizin high producing strain	0.423
DRR006522	Root Winter glycyrrhizin high producing strain	0.550
DRR006523	Root Summer glycyrrhizin low producing strain	1.326
DRR006524	Root Summer glycyrrhizin low producing strain	1.259
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.325
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.460

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.006
SRR2868004	Drought Stress (root)	10.332
SRR2967015	Control (root)	13.025

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.524
SRR9715740	Leaf	0.919
SRR9715741	Leaf	3.351
SRR9715739	Root	4.027
SRR9715742	Root	6.904
SRR9715743	Root	5.981

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.787
SRR8749028	MeJA induced 9h	6.095
SRR8749029	MeJA induced 9h	3.817
SRR8749030	Uninduced	23.337
SRR8749031	Uninduced	12.671
SRR8749032	Uninduced	11.082

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.619
SRR8400027	Control - Root	28.237