Gene detail

Gene detail information of Glyur000351s00019064

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13580.3	1.00E-106	Ribosomal protein L30/L7 family protein
NR	AFK37004.1	4.10E-164	unknown [Lotus japonicus]
COG	YP_001190213.1	3.00E-13	50S ribosomal protein L30 [Metallosphaera sedula DSM 5348]
Swissprot	tr\|Q9LHP1\|RL74_ARATH	6.00E-152	60S ribosomal protein L7-4
trEMBL	tr\|I3S9R2\|I3S9R2_LOTJA	2.00E-164	Uncharacterized protein {ECO:0000313\|EMBL:AFK37004.1}

Sequence

Transcript Sequence

>Glyur000351s00019064.1
GCCTCCGCCGTCGAAGTAGCACCAACATCGAGAAAGATGAGCCAAGAGCAAGCGAAAGCGGTGGCTCCGGAATCTGTTCTGAAGAAGCAGAAAAGGAACGAGGAATGGGCTCTTGCGAAAACGCAGGAACTTGAAGCCGCGAAGAAGAAGAGGTCCGAAACGCGAAAACTCATTTGGAGCAGAGCCAAACAGTACTCNAAGGAATACGATGAGCAGGAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGTGGGTTTTATGTCAACCCTGAAGCTAAGCTCTTGTTCATTATCAGGATCCGGGGTATCAATGCTATGCACCCGAAAACAAGGAAGATTCTGCAGCTTTTGCGTTTGAGACAGATCTTCAACGGTGTCTTTCTCAAAGTCAACAAAGCCACCGTGAACATGCTACGCCGGGTAGAGCCTTATGTCACCTACGGGTACCCTAATTTAAAGAGTGTCAGGGAATTGATCTACAAGAGGGGCTACGGAAAAGTTAACAAGGAGAGAATTGCATTGACAGACAACTCTATTATAGAACAGACTCTGGGGAAGTATGGGATAATTTGCATTGAAGATCTGATCCATGAGATAATGACTGTTGGGCCTCACTTCAGGGAGGCAAACAACTTTCTATGGCCTTTCAAGCTCANAGCTCCTCTCGGTGGTTTGAAGAAGAAAAGAAATCATTACGTTGAAGGTGGTGACGCTGGCAACAGGGAAGATTACATTAATGAACTCATTAGAAGGATGAATTAGTTTTTTTGTCATATCATATCGTNGTTAGTATAAGATTAATCATCGAGGCCAAGACATTATTTCGCTTATTCCAGTTTTGCTTNAAAAGATTTTTATTATCGTGTTTTTTATATGATGATTGAGCATATCGGGATATTAGTTCATTGTTTGCAGCGCAATGAAAGGTTATTTGGTTTATATGAATACTTGCTTATTAGAGTTTTTAAGAGATCTATACTTTTTTTAAGTGAACGATGAATGAAAGGGAGCTAAGAGCTAAAACAAAACTATCTCGGGGCATACAGAGATAGTGANTGAACAGTAGATTACAGCCGTGTGCAACCCTCTCTGATGAGCAGTAGAATACAGATCTTGTAACAAAGGAATGGAAACAAAAGGAGCTTCATACAAAAAGCATATAATTGCGTTCAGTGAATATTTGTTGAGAACTTTTTTGATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00351	124636	129452	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000351s00019064.1	PF08079.7	Ribosomal_L30_N	25	95	7.20E-24
Glyur000351s00019064.1	PF00327.15	Ribosomal_L30	97	148	3.40E-21
Glyur000351s00019064.2	PF08079.7	Ribosomal_L30_N	13	83	6.50E-24
Glyur000351s00019064.2	PF00327.15	Ribosomal_L30	85	136	3.10E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	183.015
SRR1783600	control	183.396
SRR1783602	moderate drought stress	184.410
SRR1811619	moderate drought stress	185.272

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	476.809
DRR006520	Root Summer glycyrrhizin high producing strain	471.003
DRR006521	Root Winter glycyrrhizin high producing strain	317.426
DRR006522	Root Winter glycyrrhizin high producing strain	311.698
DRR006523	Root Summer glycyrrhizin low producing strain	344.730
DRR006524	Root Summer glycyrrhizin low producing strain	347.932
DRR006525	Leaf Summer glycyrrhizin high producing strain	74.553
DRR006526	Leaf Summer glycyrrhizin high producing strain	74.468

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	268.806
SRR2868004	Drought Stress (root)	172.664
SRR2967015	Control (root)	175.709

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	90.674
SRR9715740	Leaf	115.600
SRR9715741	Leaf	100.238
SRR9715739	Root	98.163
SRR9715742	Root	212.750
SRR9715743	Root	182.623

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	738.100
SRR8749028	MeJA induced 9h	242.391
SRR8749029	MeJA induced 9h	459.162
SRR8749030	Uninduced	100.525
SRR8749031	Uninduced	92.998
SRR8749032	Uninduced	147.184

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	220.784
SRR8400027	Control - Root	172.449