Gene detail

Gene detail information of Glyur000351s00019054

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G19330.1	1.00E-102	plant intracellular ras group-related LRR 6
NR	XP_003533747.1	0	PREDICTED: plant intracellular Ras-group-related LRR protein 6-like [Glycine max]
COG	YP_003889034.1	4.00E-31	small GTP-binding protein [Cyanothece sp. PCC 7822]
Swissprot	tr\|O64566\|PIRL6_ARATH	1.00E-148	Plant intracellular Ras-group-related LRR protein 6
trEMBL	tr\|I1L1F6\|I1L1F6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G06920.1}

Sequence

Transcript Sequence

>Glyur000351s00019054.1
ATGTCGGAATTGCAAGCGTTTCAGCATCAACAACATCATCATCATCAGCTAACAATATTGAGGATGGATTTGATGAAGAAAAGGGAGGAGAGGAAGAACAAAGGGACGGAGGAGATGAAGAAATTAGAGCAAAGGCTTCAAGTTATGGACTTGAGTGGCATGTCTTTGGAGTCACTTCCCAAACCTTCGCTTGATTTCGCTACCATTTACAAACTGGACCTATCTAATAACAATCTCCAGAACATTCCAGAGTCGTTAACAGCGAGATTACTGAACTTGGAGGTGTTGGACGTGCACTCCAACCAGCTCAGGTCACTCCCCAATTCCATTGGCTGTCTCTCTAAGCTCAAGGTTTTGAATGTCTCTGGCAACTTCATCGAATCCCTTCCCAAAACCATTGAGAATTGCAGAGCCTTAGAAGAACTNAATGTCAACTTCAACAAGTTGAGCAAGCTGCCAGACACAATAGGGTTTGAGCTCATTAATCTCAAGAAGCTAGCAGTCAACTCCAACATGCTAATGTTCCTTCCTAGCTCCACCTCTCACCTAACAGCTCTGAAGGTTCTCGANGCACGCCTNAACTGCCTCAGGTCTCTCCCCGACGACCTTGAGAACCTCGTCAACCTTGAGACCCTAAACGTGAGCCAAAACTTCCAGTACCTGGTATCCCTTCCCTACTCCATAGGGCTCCTCTTGTCCCTGGTTGAACTGGANGTTAGCTACAACAGTATCAAGACCTTGCCTGACTCCATCGGCTGCCTCCNGAAGCTCCAGAAGCTGAGTGTGGAAGGAAACCCGCTTTGTTCGCCTCCGATAGAGGTGGTCGAGCAAGGGCTACATGTGGTGAAGGAGTACATGTGCCACAAAATGAACTCCGACCAAAAAACAACTAAGAAGAGGTCGTGGATGGGGAAGTTGGTGAAATGTGGGACCTTCAATGGACACACAAAAAGTGTAAAACGACCGGAGCATAAAGGTTTCAGCATGCTTCAGTATCAACCCATGAATGGTCTTGCTTCACCAGGCCTCATGGGGAGGCTATCNCCTCTTCGCCTCTTCTCACCCCGTCGATCCTTCAGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00351	30705	34170	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000351s00019054.1	PF00560.28	LRR_1	71	86	0.019
Glyur000351s00019054.1	PF12799.2	LRR_4	92	130	7.60E-10
Glyur000351s00019054.1	PF00560.28	LRR_1	139	155	0.96
Glyur000351s00019054.1	PF12799.2	LRR_4	234	269	1.50E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.968
SRR1783600	control	2.089
SRR1783602	moderate drought stress	3.155
SRR1811619	moderate drought stress	3.158

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.100
DRR006520	Root Summer glycyrrhizin high producing strain	0.099
DRR006521	Root Winter glycyrrhizin high producing strain	3.004
DRR006522	Root Winter glycyrrhizin high producing strain	2.705
DRR006523	Root Summer glycyrrhizin low producing strain	0.305
DRR006524	Root Summer glycyrrhizin low producing strain	0.274
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.392
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.335

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.234
SRR2868004	Drought Stress (root)	12.517
SRR2967015	Control (root)	15.145

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.347
SRR9715740	Leaf	1.044
SRR9715741	Leaf	3.301
SRR9715739	Root	2.606
SRR9715742	Root	2.629
SRR9715743	Root	3.134

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.070
SRR8749028	MeJA induced 9h	1.491
SRR8749029	MeJA induced 9h	1.057
SRR8749030	Uninduced	9.872
SRR8749031	Uninduced	16.782
SRR8749032	Uninduced	14.669

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.017
SRR8400027	Control - Root	10.370