Gene detail

Gene detail information of Glyur000350s00020080

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24560.2	4.00E-163	Adenine nucleotide alpha hydrolases-like superfamily protein
NR	XP_003529993.1	0	PREDICTED: uncharacterized protein LOC100818654 isoform X1 [Glycine max]
COG	YP_001975556.1	4.00E-27	tRNA(ile)-lysidine synthase [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
Swissprot	tr\|Q32RJ9\|TILS_ZYGCR	2.00E-11	tRNA(Ile)-lysidine synthase, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_01161}
trEMBL	tr\|K7L0G6\|K7L0G6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G09400.5}

Sequence

Transcript Sequence

>Glyur000350s00020080.1
CTGCATGTTCTCAAACTGTCTGTGCTGGTTTCCAGGCCAAGTGGATATTTCTGTGACTCAAAAGAGGTTATGGCGCGAGGGCTAATCCCATCGTTGCCAATTCTCACTGCAAATTGTCTATTAGCTTCATTCTCTAAAACCCCACCAACAAGTTTGAAACTTTCACTGTGTTCTTCTCATCTTCTGCACCATCACTGTCATTCTCAACCTTGCTCTCTTCCATTGGCTTGCTGCTTCAGCGTGTCTTCTTCTTCTTCTTCCCCTTCCCAATGCCCAATCGACATCTCCAAATACAGAGAAGCATTTTCCAGGCGAATGGCCTTGGCTGGACTCAAACCCCACCACCGAATTGCTTTGGGAGTCTCTGGTGGCCCTGACAGCATGGCACTCTGTGTATTAACTGCTGGATGGAAAACTGCTGGTGTTGATGCTGTCAGCACTGAGAGTGGTGGTTTCATTGATGGTCTGTTGGCAATAATTGTTGATCATGGACTACGTGCAGAGAGCAAAGAGGAGGCCAACATTGTTTGTCGCCGTGTTTCGGAAATGGGAATCAGATGTGAGATTGCCAGATGTGATTGGCCAAGTGGCAAGCCAAAACAGGGCCAGTTGCAAGAAGCTGCTCGTGAAATGAGGTACCAAATCTTTCATGATGTTTGTGCCCAACACCAGATTGGGGTGTTGCTTATTGCACATCATGCTGATGACCAGGCCGAGTTATTTATTTTAAGGCTTTCTCGAAATAGTGGTGTGCTTGGACTTGCAGGCACGCCTTTCACCTCCCAGATTTTCCCTACGCATACACATTCCTACTGTGAAGTTCCAGCAAACCAGGGCATCCTTCTTGTGCGGCCTCTTTTGGAATTTTCAAAGGAAGATATGTACAAGATATGCCAAGGAGGTNGTGAGGACTGGGTAGAAGATCCAACAAATCGAAGCCCGTTATTCACACGAAATAGGATACGAATGGCACTGAATGATTTGTCAACTTATCAGGTATATGGGCGAGTAAAGGCTCTGTGTTGTTTAAACAATTGGTTTCTTACACTTTCAGCAGCATTGAAGTCTGAACTCCAAAGAATGATTTCTGCATGTCGAATAACACGTGCATATGTTGATCAAATTTGCTATAGCTTGATACGTCATGCTGTGGTTATCATGGATCATGGATATGCTGTTATCGATTTACAGATTCTTTATCCTTTGAAAATTGAGGACATATGCCTGATGAAGTTTCTTTCCCTGTTTATCTCACAAAGGCAGAGGCAAATAAGAGGTAGTGCTTTGAAATTGCTAATGGACTACATTCGGACTTTTCCATGCAAGAACTCTATTACAGCAGCAGGTTGTTACCTTTGTCCGGATCCTGGTTCTCGAGGGTCTAGAGTCCTGGTCTGCTGTTCTGTCGACTCTGCTTTGCCTTTAAAGATGGAAGTTTTCGAGACACGCTCTTATGGACAACAGGAGCATCGTGTTGCCACTGAGTTGGAAAAGATTATAGAGGATGGAAAATCATATGCAAATCACTTGTTTCCAGATGCATCAGATGTCCACTTTTTGGATGTGAATCCTGAGTCAGTTTTAACAGAAGCTAAAAGACTAAACATGATCAGTGAATCAACCTACGGTAGCATTCGCGTATTGCAGGAGCAAGAAACCGATCGCTTCAGGTCTAAAACTGGGGTCACTTCTGACTCCGCATCAGAGCACGAGGTTGAAATTGCTACTGATTTGGGCAAATCACTTCAGCCAGGGCAGTNCTGTTACTTCATGGACCGATTTGTTCTGACATGGAAGTTGAATGATAAAATTGATAGAGACGCATTTTCCGATTTGAGTGAGGAAGGTCAGAGCTGTTGTTGCTCGAATTGTGTAGTTGATTGTGATAAAGTTCCTGAAGTCCGGCACATGATTGAATCCGATTGGCTGTATCTTGCCGAGCTATCGAAATATCCACTTTCCAAAAACTTCCCAGAATACGGTGTTATGTCAGCGAATGGAAACAAGCAGTATATCAGCAAAAAAGGCTCTCCTCTTGTTAAAATCTATTCCGGTTGCCGCAAGGAGAAGCCTACCTGTTCTGATCAATCAACAAGGACAATTACTAAGCATTCCAGTAAGTTGACCTCTCTTACCGTCATAGCAACTCGCTCTTTGTTTTTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00350	180645	185302	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008033 tRNA processing

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000166 nucleotide binding

GO:0005524 ATP binding

GO:0016879 ligase activity, forming carbon-nitrogen bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000350s00020080.1	PF01171.15	ATP_bind_3	94	300	2.60E-57

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.772
SRR1783600	control	1.838
SRR1783602	moderate drought stress	1.801
SRR1811619	moderate drought stress	1.805

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.982
DRR006520	Root Summer glycyrrhizin high producing strain	1.979
DRR006521	Root Winter glycyrrhizin high producing strain	1.540
DRR006522	Root Winter glycyrrhizin high producing strain	1.400
DRR006523	Root Summer glycyrrhizin low producing strain	1.285
DRR006524	Root Summer glycyrrhizin low producing strain	1.558
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.918
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.951

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.704
SRR2868004	Drought Stress (root)	2.366
SRR2967015	Control (root)	2.861

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.816
SRR9715740	Leaf	0.838
SRR9715741	Leaf	0.701
SRR9715739	Root	0.484
SRR9715742	Root	2.651
SRR9715743	Root	1.952

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.051
SRR8749028	MeJA induced 9h	0.949
SRR8749029	MeJA induced 9h	0.577
SRR8749030	Uninduced	0.223
SRR8749031	Uninduced	0.141
SRR8749032	Uninduced	0.185

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.855
SRR8400027	Control - Root	5.249