Gene detail

Gene detail information of Glyur000350s00020078.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24550.1	6.00E-180	proline extensin-like receptor kinase 1
NR	XP_006586722.1	0	PREDICTED: putative receptor protein kinase PERK1 isoform X1 [Glycine max]
COG	YP_001958461.1	3.00E-24	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9LV48\|PERK1_ARATH	0	Proline-rich receptor-like protein kinase PERK1
trEMBL	tr\|I1L4I8\|I1L4I8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G32390.1}

Sequence

Transcript Sequence

>Glyur000350s00020078.1
CAGCTTCACATAAAAAACGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTTCTTCATTCATTCACTTCAACACATTCTCCATTGCTTCTACTTGCTACCCCTCTCTCTCAAAGTTTCAAAGTCTTAAACTTTTTTGAGAGAGAAACACTTACACATGAACCCTCTTCTTCTTCAATTGGGTTCTCTTTAATCTTATTTTTCAAGTTTCCCCTTTGTTTTTTGATTTCATATTCTTACTCTTAATTTTATATAAAAAAAGTTTCTGCAATGTCAACTGCTCCGGCACCGTCTTCTCCGCCGGCGACCAACACCACCGCTCCTCCGCCGTCAACCCCATCCGCACCACCACCCGCCACACCTTCCGCACCGCCTCCAGCAACTCCTTCCTCCCCGCCGCCTGCAACTCCGTCGTCTCCGCCGCCGGTAACCCCCTCCGCGCCTCCGCCGGCAACTCCTTCCTCGCCTCCTCCGGCGACTCCCTCAGCGCCTCCTCCGGCAACTCCTTCCTCGCCTTCTCCGCCGGCCCCCACCACGCCATCTACCTCTCCGCCGTCACAGTCTCCGCCGTCTCCGTCCACNGGAGGAGGCACTACTCCGAGTCCACCTTCCCGGAGCTCTCCCCCTCCTCCGACCAGCTCCGGCCGAACCCCGTCGCCGCCGTCTTCGACAACTCCGCCGTCGCCGCCTTCATCGTCGTCGTCGAGTATTTCCACCGGTGTCGTGGTCGGAATCGCCGTCGGGGCTGTGGCGATTCTTCTGGTGCTGAGCATTCTGTGCATATGCTGTAGGAAGAAGAAGAGAAGACGCGATGAGGAGTACTATGTTCCTCCTCCGCCGCCGCAGCAACCGCCGCGGGGACCCAAAGATGACACTTATGGTGGTCCTCCACGCCAATGGCAACACAATGCTCCCCCTCCTTCAGACCATGTAGTCTCAATGATGCCTAAGCCACCACCTCCCGCCCCAGTGGCATCACGGCCACCACTTCATTCTCCGGTCTATGCCGCGCCACCACCTCCACCGCCTCCTTTCATGAGCAGCAGTGGTGGGTCAGGATCAAACTACTCAGGTGGTGAACCACTTCCACCTCCTTCTCCAGGCCTTTCACTTGGTTTCTCAAAGAGCATGTTTACATATGAGGAGTTGGCAAGGGCAACGGATGGATTCTCTGATGCAAACCTCCTTGGACAAGGTGGATTTGGATATGTGCATAGGGGAATCCTCCCCAATGGTAAGGAGGTTGCTGTCAAGCAGCTAAAGGCCGGAAGCGGGCAAGGAGAGCGCGAGTTTCAAGCCGAAGTAGAGATAATNAGCCGCGTTCACCACAAACATCTTGTGTCTTTGGTTGGATACTGCATCACTGGCTCCCAGAGGCTGCTTGTTTATGAATTTGTTCCNAACAACACATTGGAATTCCATTTACATGGAAAAGGGAGACCTACTATGGATTGGTCAACAAGACTGAGAATTGCTTTAGGAGCTGCAAAAGGACTGGCTTATCTTCATGAAGATTGTCATCCTAAGATCATTCATCGTGATATTAAATCTGCTAACATCCTTCTCGATTTCAAGTTCGAAGCAAAGGTTGCAGATTTTGGTCTTGCAAAGTTTTCTTCTGACGTCAATACTCATGTTTCTACTCGAGTGATGGGGACTTTCGGGTATCTGGCTCCAGAATATGCATCTAGTGGAAAACTTACTGACAAATCAGATGTTTTCTCCTATGGAGTCATGCTCCTTGAGTTAATAACTGGACGGCGACCAGTTGATAAAAATCAAACTTACATGGAAGATAGTTTGGTAGAGTGGGCTAGGCCACTGCTCACACGTGCTTTGGAAGAAGATAATTTTGATTCCCTAATTGATCCAAGGCTCCTGAATGAGTATGATCCTAACGAGATGCTTCGAATGGTGGCATGTGCTGCAGCTTGCACGCGTCACTCAGCAAAGCGTCGACCAAGGATGAGCCAGGTTGTCCGAGCTATAGAAGGAGATGTGTCTCTAGCAGATCTTAATGAAGGAATTAGACCTGGACACAGCACTGTCTACAGTTCACATGAAAGCTCAGATTATGACACTGCACAATACAAGGAAGACATGAAGAAGTTCAGAAGAATGGCATTGGGAACTCAAGAGTATGCTGGCAGCAGTGAGTACAGTGCAGCCACAAGTGAGTATGGTTTGAATCCATCCGGCTCGAGCAGCGAAAACCAGAGCCGTGCAACCACACGCGAAATGGAAAGCCGCGCAACCACACGCGAAATGGAAATGAGAAGGATGAAGAACAGTCAAGGATTCAGTGGAAGCACATGATCCTTGATGACAAATTGTTTGCTTCTTTTTATCTTTGTATAAATCCTATGCCCCCTTGATTTTCTTCACCTATGGCACAGTTGATTTTGCTTGACTGACATGTTTGGAGTGAGTGAGTGACTTACCAATTATTGTTACTATTTTTTCTCACAAATCTTTCACATCTTTTGAATTGTATTTATCCAAGGTATACAACAAAATAACACAATTCTATTCTTTCATTATTATTTTTTTCTCGTAAAGCATTGGAAATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00350	164910	169499	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.6.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000350s00020078.1	PF07714.12	Pkinase_Tyr	304	571	4.00E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	59.058
SRR1783600	control	59.467
SRR1783602	moderate drought stress	52.522
SRR1811619	moderate drought stress	52.855

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	80.375
DRR006520	Root Summer glycyrrhizin high producing strain	79.859
DRR006521	Root Winter glycyrrhizin high producing strain	9.487
DRR006522	Root Winter glycyrrhizin high producing strain	8.932
DRR006523	Root Summer glycyrrhizin low producing strain	81.859
DRR006524	Root Summer glycyrrhizin low producing strain	82.088
DRR006525	Leaf Summer glycyrrhizin high producing strain	45.495
DRR006526	Leaf Summer glycyrrhizin high producing strain	45.318

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	60.024
SRR2868004	Drought Stress (root)	47.422
SRR2967015	Control (root)	46.319

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	51.972
SRR9715740	Leaf	52.937
SRR9715741	Leaf	74.458
SRR9715739	Root	52.499
SRR9715742	Root	182.929
SRR9715743	Root	147.724

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	131.229
SRR8749028	MeJA induced 9h	106.877
SRR8749029	MeJA induced 9h	147.634
SRR8749030	Uninduced	145.735
SRR8749031	Uninduced	90.478
SRR8749032	Uninduced	95.559

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	49.193
SRR8400027	Control - Root	66.055