Gene detail

Gene detail information of Glyur000350s00020077.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G13250.1	0	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_003534200.1	0	PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic-like [Glycine max]
COG	YP_002015829.1	5.00E-40	short-chain dehydrogenase/reductase SDR [Prosthecochloris aestuarii DSM 271]
Swissprot	tr\|Q5N800\|NYC1_ORYSJ	0	Probable chlorophyll(ide) b reductase NYC1, chloroplastic (Precursor)
trEMBL	tr\|I1L4I7\|I1L4I7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G32370.1}

Sequence

Transcript Sequence

>Glyur000350s00020077.2
ATGGCCACAGTTGTGAAACTCCATGTTTTTCCAGAGAGTTTCAATAACCAACAACAACACAGGCTTAGGAGGAAGGNTTTTGGATGCTCCACTTCACTTGGGGTGTTTGGTTTTGGCCATAATAACAATTGTGATATTGGGTTGTTCTCTGTGAAAAAGTGCAGGGCTTTTAAGACTGAGGAGGGTGGTGGGGGTGATCTGAAGGAGAAAAAGTTTAGAACTTTGAAGAGAAATGAGGTGAAAGAACTCAAAAGGGAAAGTGGGTTTTGGAGTTCCCTCAGGTCTATCTTGTTGAGGAATTTCATGGTGGGTTCGAAGTCAGATGATGAGTATCGCCATGCTGTTGTTAGGATTGCCATTCAAATTGGAAGATATATTGTCACCATGATGAGCACTGGGGTTATCCTTGCAATTGGATTTCAGATGTCAGGTGGAGATAGTCAAATGGATGCACTGATATGGTATAGTTGGCTCGGAGGAGTTATCATTGGGACAATGATAGGTGCTAACATGGTGTTGGAGGAACATTGTCGTGCCGGTCCACGTAATGTTGTCATAACAGGAAGTACAAGGGGATTGGGTAAAGCCCTGGCTCGGGAGTTTCTTCTTTCGGGAGATCGCAGCCCTGAGTCTGTGCAAGCAACTATCAAAGAGCTTGAGGAAAATCTAAAGGAAGGCATCGCCACTGCAGTTGGCTCATCTTTGACAAAGCTTTCTCAGGCAAAAGTGGTAGGCATTGCTTGTGATGTTTGTGAGCCTGATGATGTTCAGAGATTGGCAAACTTTNCTATAAACAATGCTGGAACAAATAAAGGTTTTAGACCACTGCTTCAATTCAGTGACGAAGATATTAAACAGATTGTCTCAACAAATTTGGTTGGATCTATCCTTTGTACTCGAGAAGCCATGCGTATCATGAGAAACCAGGCCAAGGCAGGTCACATATTCAATATGGACGGTGCAGGTTCTGGGGGCTCTAGCACGCCTCTGACAGCTGTATATGGTTCTACAAAGTGCGGCCTTAGGCAATTTCACGGATCGCTAATGAAGGAATGCAAGCGATCCAAAGTAGGTGTCCATACAGCATCTCCAGGCATGGTTCTTACAGATCTACTTTTAAGTGGCTCAACTGTCCAAAACAGGAAAATGTTTAACATCATATGTGAGCTTCCTGAAACCGTTGCCAGAACATTGGTTCCACGGATGCGGGTTGTTAAGGGAACAGGCAAGGCCATCAATTACTTGACTCCTCCCAGAATCTTACTTGCTTTGGTCACTGCTTGGTTACGACGAGGTCGCTGGTTTGATGATCAGGGGAGAGCATTGTATGCAGCCGAAGCAGACCGACTTAGAAACTGGGCCGAAAACCGAGCCCGGTTTTCCTTCACTGATGCAATGGAAATGTACACAGAGNACACATGGTTATCAGTCTTCTCCCTTTCAGTTGTTTGTGCCTTCATAATTCTTTCCAGCACTGGCAACAATTTGCCTGGAACATGATGATGTCTTGCTTCCAAAATTTGAAAGCATGCATCTTGCTTTTATTGGAGAGGCATAATTGGTGCCTTGAAATCATCAAAGACAACAAACAGAATATGAGCACATAAAACCATAAACAAAGGTGGATCTGTTTTTTCCACGCCATGTTCCACCTTAACTCCTTCAAACAATTGTGTCTTTAACACTCTTTAGTTGTTTGTGTAATCTTTAGCTCTTAAGTTGTATGTGTCTTGTATAGGCTTCCCTGTAATCAAGCATCCCCCATTGAGATGCTTATAGTCATAGTTATGTAGTACTATGTATAGCCTTCATTTTAAATCTGTATACTGTAGTGAAATTTCATATTTTATGCCAGATTTATTTATTTAAATTCATGATTATTAGGGAGCTTTACTCAGAAATTTATATTGGACATTGGACTGCATTTTTTTTTAAGTGAACTCAGGTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00350	144421	149284	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13606	NOL, NYC1	EC:1.1.1.294	Porphyrin and chlorophyll metabolism	map00860
			Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000350s00020077.2	PF00106.20	adh_short	183	350	4.20E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.238
SRR1783600	control	8.364
SRR1783602	moderate drought stress	8.932
SRR1811619	moderate drought stress	8.762

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	38.673
DRR006520	Root Summer glycyrrhizin high producing strain	37.937
DRR006521	Root Winter glycyrrhizin high producing strain	21.863
DRR006522	Root Winter glycyrrhizin high producing strain	21.220
DRR006523	Root Summer glycyrrhizin low producing strain	67.349
DRR006524	Root Summer glycyrrhizin low producing strain	66.589
DRR006525	Leaf Summer glycyrrhizin high producing strain	147.113
DRR006526	Leaf Summer glycyrrhizin high producing strain	146.640

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.152
SRR2868004	Drought Stress (root)	33.010
SRR2967015	Control (root)	41.422

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	89.067
SRR9715740	Leaf	148.678
SRR9715741	Leaf	97.176
SRR9715739	Root	8.586
SRR9715742	Root	24.340
SRR9715743	Root	22.685

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.513
SRR8749028	MeJA induced 9h	16.897
SRR8749029	MeJA induced 9h	11.152
SRR8749030	Uninduced	6.923
SRR8749031	Uninduced	4.068
SRR8749032	Uninduced	5.373

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.604
SRR8400027	Control - Root	25.546