Gene detail

Gene detail information of Glyur000350s00020076

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24530.1	0	AAA-type ATPase family protein / ankyrin repeat family protein
NR	XP_007152834.1	0	hypothetical protein PHAVU_004G163800g [Phaseolus vulgaris]
COG	NP_436729.1	2.00E-42	CbbX protein [Sinorhizobium meliloti 1021]
Swissprot	tr\|P51228\|CFXQ_PORPU	1.00E-41	Protein cfxQ homolog
trEMBL	tr\|V7C640\|V7C640_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW24828.1}

Sequence

Transcript Sequence

>Glyur000350s00020076.1
GGAAAGAGAGAAGGGTGAGAAAGGGAAAAGCGAGTAAAAGCAGTGTGAACTGTGAATGAAGGAAGAAGAGAGGAAGATATTGAGATTTGGGGATTGAGGAGGCGCAATAGTAGGAAGCGGGGAATTCTGAATGCCAAAGACTCAACTCAAGGCGCATATTTAGCTGAAAATTAAAAATAGAAAATTAGAAGAAAAAATATCATAGAAAAACACACAACACTCTCTTTCTCTCTCCTCTTTCTCTTTCCTCAACTCTTCAATCATTCTTGAACCACTCTCTCTCTTCTTCTCCATTTTTTTTNTCTCTCTCATTATTGCCATTGGAGAATTCAGCATGAACAGGTCTCAGGATCAAAGGTCAAGACCTGCAAAGCCAGCCACCATCCATGGCTGTGCCCTCTCAGGAGACCTTGTTGGACTTCAGAGACTACTTCGAGATAACCCTTCTCTTCTCAATGAGAGAAACCCTGTTATGGCACAGACACCACTTCATGTTTCTGCAGGCCACAATAGGGCTGAGATAGTTAAATTTCTTCTTGATTGGCAAGGACCAGATAAGGTTGAGATGGAGGCCAAGAATATGTATGGAGAAACTCCGTTGCACATGGCAGCAAAGAATGGGTGCAATGAAGCCGCACGGTTACTTCTTGCTCATGGTGCTTTTGTTGAAGCCAGAGCAAATAATGGTATGACACCTTTACACCTTGCAGTTTGGTACTCATTACGNGCCGAAGAATTCTTAACTGTAAAAACATTGCTCGAATACAATGCTGATTGCAGTGCTAAGGACGATGAGGGAATGACTCCTATAAAGCATCTTTCCCAAGGNCCCGGAACTGAGAAACTTAGGGAACTATTAAACTGGCATCTCGAAGAGCAGAGAAAGAAGCGAGCTATTGAAGCATGCGGTGAAACCAAAGCTAAAATGAACGAACTCGAAAAGGAACTGTCAAATATTGTGGGTCTTAACGATCTAAAAGTACAACTACGCAAGTGGGCAAAAGGCATGCTTTTGGACGAGAGGCGTAGAGCTCTTGGTCTGCATGTTGGCACAAGAAGACCCCCTCATATGGCCTTTCTTGGAAATCCCGGAACAGGTAAAACAATGGTAGCACGGATCCTTGGAAGATTGCTCCATATGGTGGGAATTCTACCGACTGATAAAGTGACAGAGGTACAACGGACTGATTTAGTTGGTGAATTTGTCGGTCATACCGGTCCAAAAACCAGGAGGAAGATCCAGGAAGCTGAGGGGGGAATTCTTTTNGTCGACGAAGCTTATAGACTAATACCAATGCAAAAGTCTGATGATAAGGACTATGGGTTGGAAGCCTTGGAGGAGATTATGTCTGTCATGGACAATGGCAAAATTGTAGTGATATTTGCGGGGTACAGCGAACCAATGAAACGAGTAATTGGTTCTAATGAAGGTTTCTGTAGAAGGGTGACCAAGTTTTTTCATTTCAATGATTTCAATTCAGAAGAACTAGCACAAATCCTTCACATCAAGATGAATAATTTGGCAGAGAATAGTTTGCTATATGGATTTAAGTTGCATCCCAATTGCAGTATAGAAGCCATAGCGGCATTGATAGAAAGGGAAACAACGGAAAAGCAGCGCAAGGAGACGAATGGCGGTTTGGTAGCTACCATGTTGGTTAATGCCAGAGAAAATTTGGACCTAAGACTCAGCTTTGACTGTATAGATACTGAAGAACTTCTTACCATCACATTGGAAGATTTAGAAGCAGGTCTATGCCTACTATCACAGTAATCATTCTTTGGTAATTGGATATTTTGGAGCGATTCATTTCAGCTTACCTCAATGTTCNCCATTGGATATATTACAAGTTTGTAACAGTGAGGAGCTTAAGGGCCCATTTACTTTTAGAAAACGTTCTCTGTTTTCATTTTTCTGTTTTCACTTTTTAATTACAGAACTGCAGCCCTANTTTTAATTTATTTTCTGTTTTCAAATATTTGTATAAAAAATAGTGAAAACAATTCTTTATNATTTCACGTTTTTCAAANTATCATTTCACTATTTCCTATACAAATGTTCGAAAACAGGAAACAGATTGAAAATAAGGTGGCAATTTTGTAATTAAAAGTGAAAATAGGGGATAAAAACAGAAGTAAACGGCCATATTCACCATTGGACGTATTGCAAGCCTGCAACTNCACAATGAGGCGCTTGTCATGAATGAGTTTGCCACAATATGTGGATCCTTCTTTGGGAAGGGTTATTTCTTGTGCAATTGATGATGTTATGTAGGTTCTATTGATTCACTGTGCTTTATTTTTTATTGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00350	138426	142713	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000350s00020076.1	PF12796.2	Ank_2	21	113	4.10E-15
Glyur000350s00020076.1	PF00023.25	Ank	117	153	2.90E-05
Glyur000350s00020076.1	PF00004.24	AAA	247	355	9.60E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.944
SRR1783600	control	19.063
SRR1783602	moderate drought stress	11.884
SRR1811619	moderate drought stress	11.672

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	40.215
DRR006520	Root Summer glycyrrhizin high producing strain	39.836
DRR006521	Root Winter glycyrrhizin high producing strain	11.890
DRR006522	Root Winter glycyrrhizin high producing strain	11.344
DRR006523	Root Summer glycyrrhizin low producing strain	61.552
DRR006524	Root Summer glycyrrhizin low producing strain	61.584
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.706
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.520

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.683
SRR2868004	Drought Stress (root)	25.589
SRR2967015	Control (root)	26.571

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.036
SRR9715740	Leaf	23.246
SRR9715741	Leaf	26.264
SRR9715739	Root	13.993
SRR9715742	Root	47.926
SRR9715743	Root	42.488

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.618
SRR8749028	MeJA induced 9h	30.992
SRR8749029	MeJA induced 9h	33.455
SRR8749030	Uninduced	17.832
SRR8749031	Uninduced	15.925
SRR8749032	Uninduced	12.741

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.475
SRR8400027	Control - Root	31.469