Gene detail

Gene detail information of Glyur000350s00020074

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18830.1	7.00E-128	polyol/monosaccharide transporter 5
NR	XP_003620669.1	0	Myo-inositol transporter [Medicago truncatula]
COG	YP_001104793.1	1.00E-70	bicyclomycin resistance protein TcaB [Saccharopolyspora erythraea NRRL 2338]
Swissprot	tr\|Q8VZ80\|PLT5_ARATH	2.00E-158	Polyol transporter 5
trEMBL	tr\|G7KPV5\|G7KPV5_MEDTR	0	Polyol/monosaccharide transporter 1 {ECO:0000313\|EMBL:AES76887.1}

Sequence

Transcript Sequence

>Glyur000350s00020074.1
TGCCTTCATTTATTATACCATTAACATATTGCAAGATATTTTCCATAGTACATCATTTTTTTATTTGATGTGGTGATCGTGCAAATGCAATCTTCCAATAGGCCTTGAATTGCTTTTCTTCATTTCTTCACTTTCATTTATTTTTTCAGATAATAATATGCAACAAGACAATTGTGACATGGAACAAAGCAAGCACCATGATTATTACTACCCTCTTCCTGGTTCAGACCCTTCTTNTGTTGATGATGCAAAAGCTGAAGCTAGTTCTCACAATCCCAAACACAATTCATCATCAGAAGATTGTTCTTCATACCAAACCAACAAGGTTCATCTCAACAAATATGCACTCGCTGGTGCTATTTTGGCTTCCACAAACTCTATTCTCTTAGGCTATGATATTGGGGTGATGAGTGGTGCTGTGATTTTCATAAGNGAAGATCTCAAAATCACATCAGTTCAAGTAGAGATCCTTGTTGGTTGCTTGAATGTGTGTTCACTGATTGGATCCCTTGCCTCAGGCAAAACCTCTGATATGATTGGAAGGAGATACACCATAATGATTGCTGCAGCAACATTCCTCATAGGTGCTGTTCTAATGGGATTGGCACCTTCATTCCCATTCCTCATGGCTGGTCGTGTGGTTGCTGGCATTGGTGTTGGCTACTCCCTCATGATATCACCAGTTTATGTTGCTGAGCTCTCTCCTGATCTCACCAGAGGCTTCCTCACTTCCCTCCCTGAAGTCTTCATCAGTATTGGCATTCTACTTGGTTACATTTCCAATTATGNCCTCTCAGGCCTCCCAAATCACATCAACTGGAGGGTCATGCTTGGTCTTGCAGCACTGCCAGCAATTGCAGTGGCACTTGGTGTGTTGGCAATGCCAGAGTCACCAAGATGGCTTGTGATGAAAGGCAGGCTTGAGGAAGCAAGACAGGTCTTAATCAGAACATCAGAGAACAAAGGAGAAGCTGAATTGAGGCTTGCAGAGATATCAGCTGCAGCTGCTTCTTCTTCCTCCTCTTCTTCTTCTTCAGGACAAGGTGTTTGGAAGGAGTTGCTTATCACACCTACTCGCCCTGTCTTTAAGATTCTTNTGGCTGCAATTGGTGTTAACTTCTTCATGCAAGCTTCAGGCAATGATGCTGTGATATACTATAGCCCTGAAGTGTTTAAAGAAGCTGGGATTCAGGGTGAGAAGCAGCTTTTTGGGGTCACAATCATCATGGGGATAGCAAAGACTTGCTTTGTTTTCATGTCAGCATTGGTATTGGACAGGTTTGGGAGGAGGCCCATGTTGTTGTTGGGCTCATCAGGTATGGCAGTGTCACTGTTTGGGCTTGGATTGGGCTGCACCTTGCTACAGAACTCAGATGACAAGCCAGGGTGGGCCATTGCCTTGTGTGTGGTTGCTGTTTGTGCTACTGTCTCATTCTTCTCTATTGGGCTTGGACCCACAACTTGGGTCTACTCATCAGAGATTTTCCCTTTGAGGTTGAGGGCCCAAGGTTCCAGCTTGGCTATCTCTGTGAACCGTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00350	127140	129438	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000350s00020074.1	PF00083.19	Sugar_tr	67	459	1.20E-96

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.667
SRR1783600	control	4.720
SRR1783602	moderate drought stress	5.782
SRR1811619	moderate drought stress	5.631

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.786
DRR006520	Root Summer glycyrrhizin high producing strain	5.662
DRR006521	Root Winter glycyrrhizin high producing strain	2.170
DRR006522	Root Winter glycyrrhizin high producing strain	2.367
DRR006523	Root Summer glycyrrhizin low producing strain	3.022
DRR006524	Root Summer glycyrrhizin low producing strain	3.213
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.338
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.424

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.342
SRR2868004	Drought Stress (root)	12.430
SRR2967015	Control (root)	16.787

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.617
SRR9715740	Leaf	19.096
SRR9715741	Leaf	16.013
SRR9715739	Root	7.692
SRR9715742	Root	13.157
SRR9715743	Root	12.196

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.631
SRR8749028	MeJA induced 9h	3.606
SRR8749029	MeJA induced 9h	0.815
SRR8749030	Uninduced	4.313
SRR8749031	Uninduced	1.419
SRR8749032	Uninduced	1.368

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.788
SRR8400027	Control - Root	6.435