Gene detail

Gene detail information of Glyur000350s00020066.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G13260.1	3.00E-151	Flavin-binding monooxygenase family protein
NR	XP_004512975.1	0	PREDICTED: indole-3-pyruvate monooxygenase YUCCA2-like isoform X1 [Cicer arietinum]
COG	NP_108142.1	6.00E-68	dimethylaniline monooxygenase [Mesorhizobium loti MAFF303099]
Swissprot	tr\|Q9SVQ1\|YUC2_ARATH	0	Indole-3-pyruvate monooxygenase YUCCA2
trEMBL	tr\|A0A072UBE4\|A0A072UBE4_MEDTR	0	Flavin-containing monooxygenase {ECO:0000256\|RuleBase:RU361177}

Sequence

Transcript Sequence

>Glyur000350s00020066.1
ATGTTGTTCATGGACTACTTGAAGGAACTTGAGTTCAAAAGTGTCCATGATTATCAAAAGATGGATAACAAGGTAAGGTCTATATGGGTTCCAGGACCAGTTATAGTTGGTGCTGGTCCTTCAGGGCTAGCAGCAGCAGCATGCCTTAAACAAAAAGGTATTCCAAGTTTGATTCTTGAAAGAGCTGATTGTTTAGCTTCAATGTGGCAACTCAAGACTTATGATCGTTTAAGGCTTCATCTTCCAAAGCAATTCTGTCAACTCCCTCTCATGCCATTCCCAAAAAACTTACCTTCTTATCCAACCAAACAGCAGTTTTTGGCATACCTTAAAGCTTATGCTGAACACTTTGATGTAAGGCCAGCTTTTGGGAAGACTGTGGTTAGTGCTGAATTTGATCAAATGTGTGGATTTTGGAGGGTGAGAACACAAGAACTGAAAAAGGGGGTGGAGGAGACAGAATATGTGTGCCAATGGTTGATAGTTGCTACTGGTGAGAATGCTGAGGAAGTGGTGCCTCAAATTGATGGGATGGAACAGTTTCAAGGGCCTATTTTGCATACTAGCTTGTTTAAGAGTGGAAGCATGTTCTGTGGGAAGAATGTTTTGGTGGTGGGGTGTGGGAATTCTGGTATGGAGGTTTGTTTGGATCTCTGCAACCACAATGCTACACCATCCCTTGTGGTTAGAGATACAGTGCATATCTTGCCACAGCAGATGTTTGGGAAATCAACATTTGGTTTATCAATGTGGTTGCTTAAGTGGTTCCCTGTACGTTTTGTGGATCATTTTTTACTTGTAATGTCAGATCTCATGCTTGGGGACACAGCTCAATTTGGAATTCATCGCCCCAAGATTGGACCTTTGGAGCTCAAGAACTTGTACGGCAAGACCCCAGTTTTGGATGTTTGCCGGGGAATCAAACGACTAGCACACAATGCAGTGGAGTTTGTTGATGGAAAAATAGAGAACTTTGATGCCATCATACTTGCTACCGGTTACAAAAGCAACGGCAGTGACATGTTTAGTGACAAAGATGGGTTTCCAAGGAAACCATTTCCAAATGGATGGAAAGGTGAAAATGGACTATATGCAGTTGGTTTCACTAAACGGGGNTTGCTTGGTTCATCCATTGATGCAAAGAGGATTGCTGAAGATATTGAACATAGATGGAAAAGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00350	96940	99605	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K11816	YUCCA	EC:1.14.13.168	Tryptophan metabolism	map00380

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000350s00020066.1	PF13738.1	Pyr_redox_3	34	230	6.50E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.340
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.313

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.050
SRR2868004	Drought Stress (root)	1.531
SRR2967015	Control (root)	1.315

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.538
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.100
SRR9715739	Root	0.000
SRR9715742	Root	0.016
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.049
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.000
SRR8400027	Control - Root	0.243