Gene detail

Gene detail information of Glyur000350s00020061

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24520.1	5.00E-50	heat shock transcription factor C1
NR	XP_004512974.1	9.91E-123	PREDICTED: heat stress transcription factor C-1-like [Cicer arietinum]
Swissprot	tr\|Q9LV52\|HSFC1_ARATH	9.00E-66	Heat stress transcription factor C-1
trEMBL	tr\|A0A072UBW9\|A0A072UBW9_MEDTR	4.00E-107	Heat shock transcription factor {ECO:0000313\|EMBL:KEH27122.1}

Sequence

Transcript Sequence

>Glyur000350s00020061.1
AGAAAGAAAGACCACTACACACACTCTCTCTATCTCTATCTGTGACTCTCACTGTCACGGACAGAGAGAAGCACAAACACCCACGTTTACACCTTCTCACAACTCATTCAATCCACACCTCTCTCTCTCTCTCTNTTTCTGTGACTCTCTCTGAGTGGTTATTACTTTTTTCTTCTTCTTCTTCTTGTGTTCTTCTTAATGGGATAATATGATGGAGCAGAACAACAACAACGTGATCGCACCGTTCGTTGTGAAGACTTACCACATGGTGAACGATCCAACCACCGATAACCTCATAAAGTGGGGCCCAGCAAACAACAGCTTCATCGTCCTCGACCCCCTCGACTTCTCCATCTCCCTCCTCCCTGCTTTCTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTATTTTGCAAACGAGTGGTTCCTACGAGGGCAGAAGCACTTATTGAAGAACATCGTTAGAAAAAAGCACGTTGGAGGAGTTGGTGGGAGGAATAATCATGATTATAATAATTGTAATCTTTTTTATCAACAGGGGAATAAGGTGGTTGAGGATTTGGACGACGACGAGGCTATGGAAGAGATTCAAGGGATGAATAAGAGGCTTGAGACAACAGAGAAACGACCACAACAAATGATGGCTTTCCTCTGCAATGTCGTCGAGGACCCACAGGTTCTGTCTAGGATACTCCTCGAGAGGGAGAAAAAGCAGCAAAACCACCACCTCGCGGTGGAGGAAAAGAAGAAACGACGGTTGATGCCGTCGGTGACGGTGTCAGCGACGGCGGCGACGTCGTCCTCGTCGTCCTCTGGCATGGCGGTGAAGACGGAGTTCGAGGAAGACGACGAAGCAACCTTCGCTAATAACAACAACAACATGATGTCGTCGTCGTCGCCGGAGACGGGTTTTGAAATCGACGATCTCCGCCGTGTGCCGTCGTCCGCGGCGGCGGGTTGGTGGGGGCAGGGGCAAATTGGTGGATTGGGTTATGGTTATAATTATGGTTACGATCGGGTCGTTGCTCCGACGCCGTTGACGGTGGTGTCTCCGGCAGATGTGGCGGCGCCCGACGGTGGTGCTGGTGGTGGTGGGAAGGTGGGGCGTGTGAGCTTGTTTAGTGAAATGGCGGCGGAGAATAATAAAAGTTCGCTGCCGCCTTATCCCTTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00350	67451	69056	+

Gene family

Gene family	subfamily
Transcription Factors Family	HSF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009408 response to heat

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000350s00020061.1	PF00447.12	HSF_DNA-bind	13	71	4.50E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.539
SRR1783600	control	9.689
SRR1783602	moderate drought stress	22.821
SRR1811619	moderate drought stress	22.872

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	88.070
DRR006520	Root Summer glycyrrhizin high producing strain	89.007
DRR006521	Root Winter glycyrrhizin high producing strain	381.715
DRR006522	Root Winter glycyrrhizin high producing strain	370.934
DRR006523	Root Summer glycyrrhizin low producing strain	122.953
DRR006524	Root Summer glycyrrhizin low producing strain	125.275
DRR006525	Leaf Summer glycyrrhizin high producing strain	43.691
DRR006526	Leaf Summer glycyrrhizin high producing strain	42.989

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.979
SRR2868004	Drought Stress (root)	46.120
SRR2967015	Control (root)	85.179

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.274
SRR9715740	Leaf	8.904
SRR9715741	Leaf	8.991
SRR9715739	Root	32.524
SRR9715742	Root	15.345
SRR9715743	Root	20.604

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.155
SRR8749028	MeJA induced 9h	14.915
SRR8749029	MeJA induced 9h	11.625
SRR8749030	Uninduced	1.734
SRR8749031	Uninduced	1.804
SRR8749032	Uninduced	3.814

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	44.585
SRR8400027	Control - Root	40.212