Gene detail information of Glyur000350s00020059 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G32350.1 | 2.00E-64 | Regulator of Vps4 activity in the MVB pathway protein |
| NR | XP_004512972.1 | 0 | PREDICTED: uncharacterized protein LOC101515737 isoform X3 [Cicer arietinum] |
| trEMBL | tr|A0A072UBV7|A0A072UBV7_MEDTR | 0 | Regulator of Vps4 activity in the MVB pathway protein {ECO:0000313|EMBL:KEH27107.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00350 | 36820 | 41364 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000350s00020059.1 | PF03398.9 | Ist1 | 15 | 171 | 6.30E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 53.163 |
| SRR1783600 | control | 52.928 |
| SRR1783602 | moderate drought stress | 71.520 |
| SRR1811619 | moderate drought stress | 71.904 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 45.515 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 45.262 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.665 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.043 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.487 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.256 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.671 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.843 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 48.934 |
| SRR2868004 | Drought Stress (root) | 40.364 |
| SRR2967015 | Control (root) | 48.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.271 |
| SRR9715740 | Leaf | 10.092 |
| SRR9715741 | Leaf | 16.077 |
| SRR9715739 | Root | 16.451 |
| SRR9715742 | Root | 42.922 |
| SRR9715743 | Root | 38.522 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 56.200 |
| SRR8749028 | MeJA induced 9h | 58.893 |
| SRR8749029 | MeJA induced 9h | 39.701 |
| SRR8749030 | Uninduced | 9.896 |
| SRR8749031 | Uninduced | 6.345 |
| SRR8749032 | Uninduced | 16.245 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 52.360 |
| SRR8400027 | Control - Root | 51.084 |