Gene detail information of Glyur000350s00020053 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G46330.1 | 4.00E-12 | arabinogalactan protein 16 |
| NR | XP_003620527.1 | 6.11E-25 | Arabinogalactan peptide [Medicago truncatula] |
| Swissprot | tr|O82337|AGP16_ARATH | 1.00E-15 | Arabinogalactan peptide 16 (Precursor) |
| trEMBL | tr|G7KNJ1|G7KNJ1_MEDTR | 2.00E-25 | Arabinogalactan peptide-like protein {ECO:0000313|EMBL:AES76745.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00350 | 13758 | 14605 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000350s00020053.1 | PF06376.7 | DUF1070 | 31 | 63 | 1.20E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 31.326 |
| SRR1783600 | control | 30.941 |
| SRR1783602 | moderate drought stress | 22.755 |
| SRR1811619 | moderate drought stress | 22.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 452.106 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 444.992 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.004 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.469 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 582.531 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 579.543 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 216.751 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 215.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.969 |
| SRR2868004 | Drought Stress (root) | 63.374 |
| SRR2967015 | Control (root) | 116.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 191.150 |
| SRR9715740 | Leaf | 185.927 |
| SRR9715741 | Leaf | 180.409 |
| SRR9715739 | Root | 132.651 |
| SRR9715742 | Root | 149.357 |
| SRR9715743 | Root | 121.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 146.027 |
| SRR8749028 | MeJA induced 9h | 93.597 |
| SRR8749029 | MeJA induced 9h | 189.487 |
| SRR8749030 | Uninduced | 251.812 |
| SRR8749031 | Uninduced | 197.132 |
| SRR8749032 | Uninduced | 223.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 46.953 |
| SRR8400027 | Control - Root | 115.689 |