Gene detail

Gene detail information of Glyur000350s00020051.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24503.1	0	aldehyde dehydrogenase 2C4
NR	XP_007152818.1	0	hypothetical protein PHAVU_004G162300g [Phaseolus vulgaris]
COG	YP_722268.1	1.00E-156	aldehyde dehydrogenase [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q56YU0\|AL2C4_ARATH	0	Aldehyde dehydrogenase family 2 member C4
trEMBL	tr\|V7C3S3\|V7C3S3_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW24812.1}

Sequence

Transcript Sequence

>Glyur000350s00020051.1
ATATGTGAGATATATGTCTATATATAACTAGTTGTTGTACTTCTTTAACACACAATAGCCAATTACACTCCTTTCCTCAAATTACTCTCTCTATAAATTACTTATTAGGGAGAAAAGTAGATAGAGATGGCAATTCTCAGCCATGGTCACAGCAATGGAGACTCCTTTGTCAAGATTCCAACTGTAAAGTTTACAAAGCTTTTCATCAATGGAGAATTTGTGGACTCAGTTTCAGAGGAAGTGATTACAGAAATAGCAGAGGCTTCCAAAGAAGATGTTGATATTGCTGTGAAGGCCGCACGTGAGGCATTCGATTATGGTCCATGGCCACGCATGACCGGTGCTGGAAGAGCAAAGATTATGCTAAAATGGGCAGAGCTAATTGAACAGAACCAGGAAGAAATAGCAGCACTGGATACCATTGATGGAGGGAAGCTATACAGTTGGTGTAAGGATGTGGATGTTCCTGAAGCAGCCAATATCCTACGTTACTATGCTGGTGCTGCTGATAAAATCCATGGACATGTGTTCAAAACTTCAAGGGACCTCCACTTGTATACACTGATGGAACCTATTGGTGTTATTGGACACATTATCCCTTGGAATTTCCCAACCGTTATGTTCTTTGCTAAGGTTAGCCCTGCCTTGGCTGCTGGTTGCACCATGGTCCTCAAGCCTGCTGAGCAAACACCTCTCTCATCGCTCTTTTATGCGCATCTTGCTAAGCAGGCTGGTATACCAGATGGAGTGCTCAATGTACTCCCCGGATTTGGCTCAACTGCTGGGGCTGCAATAGCCTCACACATGGACATTGATGCGATCAGTTTCACAGGCTCAACAGAAACCGGTCGCCGAGTAATGCAGGCCGCGGCGATGAGCAATTTGAAACCTGTTTCACTTGAATTGGGAGGCAAGTCTCCTGTCTTGATTTTTGATGATGCTGATGTAGATAAAGCTGTTGAACTTGCTCTCTTTGGTATTCTACACAACAAGGGAGAAATCTGTGTTGCATTTTCCAGAGTTTTTGTCCAGGAAGGGATTTATGATGAATTTGAGAAGAAGCTAGTGGAGAAGGCAAAAACTTGGGTAGTTGGGGACCCTTTTGATCCTAAAGTTCAACAAGGACCCCAAACTAGTAAGGCACAATTTGATAAAATTCTTTCCTATATTGAGCATGGAAAGAATGAAGGAGCCACCCTTTTGACAGGTGGTAAAAGAGTGGGAAACAAGGGTTACTACATTGAACCTACTATTTTTGCCTATGTTAAGGAGGATATGCTGATAGCACAAGATGAAATATTTGGACCTGTGATGGCACTTTCTAAGTTCAAGACCATTGAGGAAGCAATTAAGAAAGCCAACAACACCAGATATGGCCTAGCAGCAGGGATTGTGACCAAGAACTTGGACATTGCCAACACTGTCTCAAGGTCCATCCGGTACAAGATGAGTGGGTTTGGAAGAGATTATGGATTGGAAGCACTTAACAAGTATCTTCAAGTTAAATCTGTAGCAACTCCTATTCACAATTCTCCATGGCTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00350	6331	10179	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12355	REF1	EC:1.2.1.68	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000350s00020051.1	PF00171.17	Aldedh	33	440	3.00E-156

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.052
SRR1783600	control	2.038
SRR1783602	moderate drought stress	3.157
SRR1811619	moderate drought stress	2.956

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.076
DRR006520	Root Summer glycyrrhizin high producing strain	1.753
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.153
DRR006524	Root Summer glycyrrhizin low producing strain	0.152
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.859
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.772

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.796
SRR2868004	Drought Stress (root)	8.191
SRR2967015	Control (root)	4.918

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.079
SRR9715740	Leaf	6.858
SRR9715741	Leaf	10.729
SRR9715739	Root	0.639
SRR9715742	Root	4.706
SRR9715743	Root	3.333

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.593
SRR8749028	MeJA induced 9h	6.247
SRR8749029	MeJA induced 9h	3.090
SRR8749030	Uninduced	70.404
SRR8749031	Uninduced	49.180
SRR8749032	Uninduced	20.888

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.047
SRR8400027	Control - Root	31.763