Gene detail

Gene detail information of Glyur000349s00021112.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G01040.1	3.00E-158	Glycosyl hydrolase superfamily protein
NR	XP_004512315.1	0	PREDICTED: chitinase domain-containing protein 1-like isoform X1 [Cicer arietinum]
COG	YP_002509922.1	2.00E-18	chitinase [Halothermothrix orenii H 168]
trEMBL	tr\|G7K407\|G7K407_MEDTR	0	Glycoside hydrolase family 18 protein {ECO:0000313\|EMBL:AES95439.2}

Sequence

Transcript Sequence

>Glyur000349s00021112.1
CTACGCCGTCGTTTTAGTCATTGGAAAAACNGAGAGAGAAACCGTTGGGGCGATATGGCGAAGAAGCGAGATCACATATCAGCCCCGAGTTCCGGTCGCCGGGAAAACCGAGTCAAGCCATCTTCGCGAACTGACTCAGACTCAGCTTCGGCCGGTGGCAGCAAAGTTGTTGCGCTCTTGATCGCGTCGTCGGTCATTGCCGTCGTCGCTGCTTACAGTTACAGGTTGAGACAATCTTCTCCTCCTTCGCAACATAAGGAATCGTATGTGTATCAGCGAGGCCTTGTCACAACCGATGCCAATTACCAAGACATACTCACTGAGAATTCGAAAGTATCAGAAAATACATCTCAGCGCCATTATACTTATCCTGTGCTTGGCTACATTACTCCCTGGAACTCTCGGGGATATGAAATGGCAAAAAGGTTCAACTCTAAGTTTACACATTTATCACCTGTCTGGTATGATATAAAGAGCCAACAGACTAGCTTAGTTCTAGAGGGGAGACATAATGCTGACACAGGATGGATCTCAGAGCTTAAAAAGACGGGAGAAGCTCTGATCTTGCCTAGAGTTGTTCTAGAAGCATCACCAGCAGAGCTGCTGAGAAAGAAGAAACAAAGGAACAAAGCCATTAACCTCATAGTGACAGAGTGCAAGGAAATGGGATATGATGGTATTGTCTTAGAATCTTGGTCAAGGTGGGCAGCTTATGGTGTCTTGCATGATCCAAGCATGCGGAATTTGGCATTGCAGTTTGTAAAACAGCTTGGAGATGCACTGCGTTCTATAAGCTCAGAGAAAAATAGTGGGCAGAAGTTGCAGTTGATCTATGTTATAGGTCCGCCATCTTCTGAGAAACTGCAAGCGCATGACTTTGGTCCAAAAGATCTTGAGACTTTAAGTGAAGCTGTGGATGGATTCTCGTTAATGACATATGACTTCTCTAATCCTCACAACCCTGGTCCTAATGCACCTTTGAAATGGATTCAAATTATTCTTCAGCTGCTTCTTGGTGCCTCTGCCAATAGAGCCCAAAACTTGGCCCCCAAGATATTTCTTGGCATCAACTTCTATGGAAACGATTTCTCCCTTTCAAGAGATTCAGGTGGTGGAGCTATTATCGGGAGAGATTACCTGGCACTTTTGGAGAAGCACAGACCCGTACTGCAGTGGGATAAGAACAGTGGGGAGCATGTTTTCTTTTACACTGATGACAAGGATATTAAGCATGCGGTATTCTATCCCTCTTTAAAGTCAATTTCCTTGCGGTTAGAGGAAGCCCGTTCATGGGGATGTGGCATATCGATCTGGGAAATTGGTCAAGGTTTGGATTATTTTTTTGACCTTCTGTGAAAGACCGTATATGTACTAGTTTTTATGTCCCATATGTTAATGTTTATTCATACATGTGCTCATCCTGTATTCAGTATAATTGAAATGCACTTCGGTCAAAATGGGAAGTCGGTAGATCGTATTAAAATGAATAATGATAATCTATGTTTGGCAAAAATTAGTTCATAGCAAATAAATTAGCTAATGGCAAATGAGTTTATTTTGGAAACCGCGTGCGGCTGCTCATGGTGGATGACACAAAGAAGAGAGAAAACAGTGTAGCAGTGATGATTTCAACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00349	170548	175267	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GHnc

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006032 chitin catabolic process

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0004568 chitinase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000349s00021112.1	PF00704.23	Glyco_hydro_18	107	424	1.10E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.110
SRR1783600	control	12.932
SRR1783602	moderate drought stress	11.489
SRR1811619	moderate drought stress	11.165

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.348
DRR006520	Root Summer glycyrrhizin high producing strain	13.009
DRR006521	Root Winter glycyrrhizin high producing strain	14.723
DRR006522	Root Winter glycyrrhizin high producing strain	14.703
DRR006523	Root Summer glycyrrhizin low producing strain	11.462
DRR006524	Root Summer glycyrrhizin low producing strain	11.500
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.005
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.973

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.043
SRR2868004	Drought Stress (root)	18.482
SRR2967015	Control (root)	17.791

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.075
SRR9715740	Leaf	7.134
SRR9715741	Leaf	6.827
SRR9715739	Root	4.963
SRR9715742	Root	8.045
SRR9715743	Root	6.626

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.882
SRR8749028	MeJA induced 9h	17.621
SRR8749029	MeJA induced 9h	10.241
SRR8749030	Uninduced	10.425
SRR8749031	Uninduced	7.754
SRR8749032	Uninduced	8.709

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.088
SRR8400027	Control - Root	16.164