Gene detail information of Glyur000349s00021110.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G35605.1 | 5.00E-22 | SWIB/MDM2 domain superfamily protein |
| NR | XP_004512323.1 | 3.27E-59 | PREDICTED: upstream activation factor subunit UAF30-like [Cicer arietinum] |
| COG | YP_002130904.1 | 5.00E-21 | SWIB-domain-containing protein implicated in chromatin remodeling [Phenylobacterium zucineum HLK1] |
| Swissprot | tr|Q9FMT4|SNF12_ARATH | 2.00E-06 | SWI/SNF complex component SNF12 homolog |
| trEMBL | tr|G7K408|G7K408_MEDTR | 7.00E-55 | Uncharacterized protein {ECO:0000313|EMBL:AFK37033.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00349 | 159903 | 161649 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SWI/SNF-BAF60b |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000349s00021110.1 | PF02201.13 | SWIB | 51 | 126 | 3.00E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 45.690 |
| SRR1783600 | control | 46.195 |
| SRR1783602 | moderate drought stress | 40.641 |
| SRR1811619 | moderate drought stress | 40.588 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 59.333 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 58.557 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.875 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.263 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 50.378 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 50.589 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 32.192 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 31.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 69.955 |
| SRR2868004 | Drought Stress (root) | 52.910 |
| SRR2967015 | Control (root) | 47.720 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 36.460 |
| SRR9715740 | Leaf | 36.962 |
| SRR9715741 | Leaf | 34.292 |
| SRR9715739 | Root | 71.130 |
| SRR9715742 | Root | 40.792 |
| SRR9715743 | Root | 46.706 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 68.893 |
| SRR8749028 | MeJA induced 9h | 21.469 |
| SRR8749029 | MeJA induced 9h | 34.701 |
| SRR8749030 | Uninduced | 4.734 |
| SRR8749031 | Uninduced | 2.158 |
| SRR8749032 | Uninduced | 3.756 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 64.353 |
| SRR8400027 | Control - Root | 66.445 |