Gene detail information of Glyur000349s00021109 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G31760.1 | 2.00E-07 | SWIB/MDM2 domain superfamily protein |
| NR | AFK40164.1 | 5.34E-67 | unknown [Lotus japonicus] |
| trEMBL | tr|I3SIS2|I3SIS2_LOTJA | 2.00E-67 | Uncharacterized protein {ECO:0000313|EMBL:AFK40164.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00349 | 156301 | 157361 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SWI/SNF-BAF60b |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000349s00021109.1 | PF02201.13 | SWIB | 32 | 103 | 0.00029 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 47.646 |
| SRR1783600 | control | 47.911 |
| SRR1783602 | moderate drought stress | 36.914 |
| SRR1811619 | moderate drought stress | 37.203 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 65.366 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 64.608 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 38.299 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 37.918 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 52.143 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 51.938 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.878 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 73.341 |
| SRR2868004 | Drought Stress (root) | 60.640 |
| SRR2967015 | Control (root) | 57.894 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 40.433 |
| SRR9715740 | Leaf | 50.092 |
| SRR9715741 | Leaf | 46.446 |
| SRR9715739 | Root | 55.765 |
| SRR9715742 | Root | 56.812 |
| SRR9715743 | Root | 54.602 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.480 |
| SRR8749028 | MeJA induced 9h | 16.212 |
| SRR8749029 | MeJA induced 9h | 25.018 |
| SRR8749030 | Uninduced | 15.864 |
| SRR8749031 | Uninduced | 9.923 |
| SRR8749032 | Uninduced | 12.751 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 86.686 |
| SRR8400027 | Control - Root | 91.638 |