Gene detail

Gene detail information of Glyur000349s00021108.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G45360.1	2.00E-99	F-box family protein
NR	XP_004512325.1	0	PREDICTED: F-box protein SKIP31-like [Cicer arietinum]
Swissprot	tr\|Q9FHK0\|SKI31_ARATH	2.00E-132	F-box protein SKIP31
trEMBL	tr\|I1J879\|I1J879_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G35750.1}

Sequence

Transcript Sequence

>Glyur000349s00021108.1
CAAACCCATACAACACAGGGAACGGGTCGGGTCGATCCGAAAAGCATCCAGCCGTCCATTCTGCCTTGCACCGAATCTTTATCACCATCATCATCTACCCCCTTTGCCATCTCGTTGCGATTCCACAACCGTCCTTCAAATTCCGGCCACCGGAGCGCTCTCTCTCCGGTTACCTCTTTTCTCCATTTCCCATTCGATCTCCTTTCCGCAACTGCATCCTCCCCACTTCCTAGGGTTTCCGTGACACCATGACCATTTCAGACGACGAGGACGAAAATCTAGCTCANTTTCTGGAATCAGAAGTCCTCTCCGAGGTTTCTGACCAGGAAGAGGAAAAGGTGGAGGAACCCAAAGCAAAGAGAAAACGCATAGAAGAGGCTGNGAGTACCAAGCAGGATACCAAACAAAGTTCTGGTTCATCATCTGAGCCTAAGAACAATGGTGGCAATAATGGGGTGGTGCCCAGAAGGATTGANACTGGTTTTTTCAGCAAAGTCCCTCCGGAGCTTTTCCATAACATCCTTAAATTTCTGTCGTCCGAGGACCTTATATCTTGTACATTAGTCTGTAGGTTTCTAAATTATGCAGCATCTGATGAAGCATTGTGGCGTCGCCTGTACTGTATGCGATGGGGTCTTCTCCCCCCCACGAGGAAGATTAGGGACTGCCCATGGAAAAAGCTATACATTCAGCGTGACGGAGAGGATATGGTTGAACTTGTCAGAAACTGCCAAAATGAGTTTAAGGAGTATTATATTCAAATGCAAGCAGCTAAGAGAAGTCAAGCACCTCTTCCNTCACAGTTGAAGGATGATAGGATAATTCTTGACAAAACATTATCTGATCAAGTCTCATCATGGAAAAGCAGTAAGGGCCTCAGTGATACAGTGGTGACTGATCATGCTTGTTCTGGGGAGACATGCTCATACTACCAAATTGGAGATGTATTTATCTGTGAGAAGACTGGACAAGTCCATGTTTGTGACGATACNTGTAGGGAAGTAGTTATGGACCCCACCAACGAGCTTTTGGTCTGTACAATATCTGGGCACTGTTTTGATAGACTACTATCGCCATCTGAAATGGAGCCTGATGCTGAGCAGCAGCCTGGGGTAACTGATGAGGCAGAACCATTTATGGGATCTGGTCGTTTTGCACGAGCTTATTTGCTGGGATACAATTGTGCTGATGAAAAGGAGCTTGAAGCTACTTTGAGGTTTTGCTGATCCCCATTTAGCTCTTCTGAAGTGGATGGTCTCATGTCTCAACATTTACCTAGTTAAACATCACATGTATCGGATTCGCTTTTTCAGTTTCTCTTGGCACAAGGATTATCTCATATCTGCTTNGTCTTAGATTATAAAACTCTGCTTTTGTCTAATTTGTCTTTTATGTTAATAGCTGTATGCTATAAATTATAGTCGAATCCCATTAGAAGAATTTCTTTTCATCATTACTGCAATTGTTGGCCCTTCATGTCTAGAAAAAATCTTGGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00349	151513	154745	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000349s00021108.1	PF12937.2	F-box-like	81	125	1.20E-11
Glyur000349s00021108.1	PF03048.9	Herpes_UL92	224	282	8.00E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.370
SRR1783600	control	15.746
SRR1783602	moderate drought stress	18.695
SRR1811619	moderate drought stress	19.086

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.031
DRR006520	Root Summer glycyrrhizin high producing strain	14.042
DRR006521	Root Winter glycyrrhizin high producing strain	37.637
DRR006522	Root Winter glycyrrhizin high producing strain	37.017
DRR006523	Root Summer glycyrrhizin low producing strain	14.495
DRR006524	Root Summer glycyrrhizin low producing strain	14.535
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.754
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.707

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.541
SRR2868004	Drought Stress (root)	23.144
SRR2967015	Control (root)	28.139

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.778
SRR9715740	Leaf	20.415
SRR9715741	Leaf	20.000
SRR9715739	Root	15.435
SRR9715742	Root	16.811
SRR9715743	Root	16.987

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.243
SRR8749028	MeJA induced 9h	19.080
SRR8749029	MeJA induced 9h	11.776
SRR8749030	Uninduced	15.536
SRR8749031	Uninduced	14.150
SRR8749032	Uninduced	14.045

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.647
SRR8400027	Control - Root	33.558