Gene detail

Gene detail information of Glyur000349s00021103.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G35610.1	xyloglucanase 113
NR	XP_006590766.1	PREDICTED: uncharacterized protein LOC100789338 [Glycine max]
trEMBL	tr\|K7LNS4\|K7LNS4_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G09650.2}

Sequence

Transcript Sequence

>Glyur000349s00021103.1
ATGGGGTGTGAGGAAGTGGCATATTCGAGGCCTCTGTTCCTTACGATCTATACCGTTGTCATCGTTGGCATCGTCGTTTCCTCCTTATACGTCTTCTCCGCCATTCACTCCTCCTCCACCACCCCTTCTTCTGCTTCCTGGTCCTCTTTCCCTCCCCTTTCAAGTTCAAATGAGGGTACTACTCGTCTTTCGGATCAATCACTTAATGGTTCTCAGTCAGCAACTGTGCATGTTGTGCCCTTTCCTCCTCCTCCCCCAGAACCACAAAGTGTGAGGAAAAGACCTTTTTTGGATGTTCCACCACGGAATAAAAAGATGCCACCTTTGAAGGCTTTCAGACTGACCNAAGAACTGGTTCACCAAAGGGTGAAAGATAACATTATAATAGTGACCTTTGGTAACTATGCATTCATGGACTTCATTCTTACTTGGGTTAAACAGTTGAATGATCTCGGACTTTCCAATTATCTTGTTGGTGCAATGGACACCAAATTATTGGAGGCACTTTATTGGAAAGGGGTACCGGTTTTTGACATGGACAGCCATATGAGCACATTAGATGTTGGCTGGGGGTCTCCAACATTTCATAAAATGGGGAGAGAGAAAGTTATTTTGATAAACTCCATACTGCCTTTTGGTTACGAACTGTTGATGTGTGATACTGACATGGTTTGGTTGAAGAACCCACTTCCATATCTTGCTCGTTATCCTGCAGCAGATGTTTTAACATCCAGTGATCAAGTTGTACCCACAGTTGTTGATGACAGTCTGGAAGTTTGGCAAGAAGTTGGTGCCGCTTACAACATAGGAATTTTCCATTGGAGACCTACAGAATCTGCAAAAAAATTGGCAAAGGAATGGAAAGAACTAGTCCTAGCTGATGATAAGATATGGGATCAGAATGGGTTTAATGATATTGTCCACAGACAGTTAGGACCTTCTGTTGATGAGGACAGTGGACTTGTTTATGCTTATGATGGAAATCTAAAGCTGGGAATTTTGCCTTCAAGCATCTTCTGTAGTGGGCATACATATTTTGTCCAGGCTATGTATCAGCAACTCAGGTTGGAGCCATATGCAGTGCACACAACATTTCAGTATGCAGGCACTGAAGGAAAGCGCCACCGATTGCGAGAAGCCATGCTTTTCCATGATCCACCTGAATACTATAATCCTCCTGGGGGTTTCTTGTCATTTAAGCCATCTATTCCGAAAAGCTTGTTGCTAAACGGGAAGCATACCATTGGATCGCATTTCACCCTTGTTAATTACCAAATAAAACAGATTAGGACGGCACTTGCAATTGCTTCCCTTCTGAATAGAACGCTGGTCATGCCTCCACTATGGTGCAGAGTTGATAGGCTATGGTTTCCCCATCCTGGTGTTTTGGAGGGGTCTATGACTAGACAACCTTTTCTCTGTCCTTTGGATCATGTATTTGAGGTGAATGTCATGTTGAAAGAGCTCCCAGAGGAAGAGTTTGGCCCTGGAATAGATATTAGAGAGTACTCAATATTTGATAATCCCTCTCTGCCTTCAGAGGTGAAGAAGTCATGGCTTGATGTTCAGCTNTGTAGAGAAGGAACCCAAGATTGTAATGCATCAAACAATGCTACTGTTGGGGGAGTACTTAAATTTCCAAAGCATAGCAATGAAGAAACGTTCATGAAAGTATTCTCTTCATTCAAGGATGTAAAAGTCATCCAGTTCTCTTCAATGCAAGATGCTTTTACNGGCTTCGCAGACAAGGAAAGGGAAGAGAGATTCAGAAAACGCGTTAAACATTATGTGGGTATATGGTGCTGTGTGCTTGATCACACTCCTGGTCACATATACTATGATATGTACTGGGATGAGAAACCTGGATGGGAGCCAATTCCTCCTCAAACTTCCGCGGATGATCATCCACCTTGGTGAGGTCAACTTCAGGATTGTGTTTGTCAAAAGCATTATGATGGANGGGGGATACACTCATACACACAAGAGAGAGATTTAAAGGTGGTTTAGTTTCCAACTCATTGTCAAGACCAAGATTGTATAATTGCGGAAGTAAAGNAAGAGTCTTTATCCATGATGAGGGTGTCAGTTATTAGAGAGATGAGACAATGTGATTCTTGTGTAAAAACGGTAAGAAAATGTTTTGTATCAAAGTTTCCAACATGGAAAACCAGAGAAATGGAAAAGCCAACAATTTCTCAGATGAGGTTGTAGTTTTTGGACGTTGATGTCTTAGTTGACATTGAATTGCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00349	125831	131263	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT77

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K20784	XEG113	EC:2.4.2.-	Other types of O-glycan biosynthesis	map00514

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000349s00021103.1	PF03407.11	Nucleotid_trans	153	377	8.40E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.506
SRR1783600	control	10.573
SRR1783602	moderate drought stress	11.099
SRR1811619	moderate drought stress	10.783

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.283
DRR006520	Root Summer glycyrrhizin high producing strain	7.065
DRR006521	Root Winter glycyrrhizin high producing strain	4.370
DRR006522	Root Winter glycyrrhizin high producing strain	4.260
DRR006523	Root Summer glycyrrhizin low producing strain	10.983
DRR006524	Root Summer glycyrrhizin low producing strain	11.057
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.628
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.442

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.387
SRR2868004	Drought Stress (root)	32.163
SRR2967015	Control (root)	36.295

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.602
SRR9715740	Leaf	13.628
SRR9715741	Leaf	14.046
SRR9715739	Root	3.751
SRR9715742	Root	11.229
SRR9715743	Root	8.948

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.026
SRR8749028	MeJA induced 9h	34.586
SRR8749029	MeJA induced 9h	25.208
SRR8749030	Uninduced	21.279
SRR8749031	Uninduced	14.116
SRR8749032	Uninduced	11.174

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.201
SRR8400027	Control - Root	19.803