Gene detail

Gene detail information of Glyur000349s00021101

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G19230.1	0	cytochrome P450, family 707, subfamily A, polypeptide 1
NR	XP_007158078.1	0	hypothetical protein PHAVU_002G122200g [Phaseolus vulgaris]
COG	YP_001659897.1	3.00E-68	cytochrome P450 [Microcystis aeruginosa NIES-843]
Swissprot	tr\|Q949P1\|ABAH1_ARATH	0	Abscisic acid 8'-hydroxylase 1
trEMBL	tr\|V7CIP1\|V7CIP1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW30072.1}

Sequence

Transcript Sequence

>Glyur000349s00021101.1
GTCACAAACACACCTCCTTCTCCTCCTTCCTTCACTANATATCATCCTTCACCTATAACAAGCCACTAAAAGTCACACTAACATAAAACATGGAACTAAGCATCATGTTATGTTTGTTTGCTTCTTTTCTCTTCATTGTTCTGTTCAGGAAACTCATCAAACCCTTTGTCCTAAAACTTAAGGACTTGCCACTCCCACCTGGTTCCATGGGTTGGCCTTACATAGGAGAAACCTTTCAAATGTATTCTCAAGACCCAAATGTCTTCTTTGCCACAAAAATAAAAAGGTATGGTTCTATGTTCAAGTCGCACATATTGGGTTGTCCATGTGTGATGATTTCTAGCCCCGAGGCTGCAAAGTTTGTGCTTAACAAAGCTCAACTCTTCAAGCCAACATTCCCAGCAAGCAAAGAGAGGATGTTGGGAAAACAAGCTATCTTCTTTCACCAAGGAGAGTACCATGCTAACTTGAGGAGGCTTGTGCTTCGTACCTTCATGCCCGAAGCGATCAAAANCATCGTCCCAAACATTGAATCCATTGCCCAAGATTGTCTCAAATCATGGGAAGGACGTTTGATCACCACTTTCCTTGAAATGAAGTCGTTCACCTTCAATGTTGCCCTTCTTTCNATTTTTGGGAAAGANGAGATTCTGTACAGAGAGCGNNTGAAACAGTGCTACTACACNCTTGAGAAAGGNTACAACTCAATGCCAATTAACCTTCCTGGGACACTGTTCCACAAGGCTATGAAGGCNAGGAAGGAGCTAGCACAGATCTTGGCACAAATAATCTCAAGCAGGAGGCAGAGGAAGCAAGAGTACAAGGACTTGTTGGGTTCNTTCATGGGTGAGAAAGCAGGGCTCACCGATGAACAGATAGCAGATAATGTAATTGGTGTCATATTCGCAGCCCGTGACACCACGGCCAGTGTGCTTACGTGGATTGTCAAGTACCTCGGTGAAAACCCCTGTGTCCTAGAAGCTGTGACTGAGGAACAAGAGTGCATATTGAAGAGCAAGGAAGAAAGTGGTGAAGAGAATAAGGGTCTGAATTGGGAAGATGCTAAAAAGATGCCAATAACTTCAAGGGTTATTCAGGAGACTCTAAGAGTTGCTTCAATTTTGTCCTTCACTTTCAGAGAAGCAGTAGAGGATGTTGAATATCAAGGGTATCTTATACCAAAAGGGTGGAAAGTATTGCCACTATTTAGGAACATACACCACAGTCCAGACAACTTCAAAGAGCCAGAAAAGTTTGATCCCTCTAGATTTGAGGCTGCTCCAAANCCCAATACTTTTATGCCATTTGGCAGTGGGATCCACGCGTGTCCTGGGAATGAATTGGCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAGGTGGTCTGTGGAGGGTGCAAAGAATGGGATTCAATATGGCCCTTTTGCTCTTCCCCAAAATGGCTTGCCCATCACATTATATCACAAGAAATAGATAGATACCACTTGAACAAAAGACAGATACAAGCCAACCCTGGTTATCTGCATCTTTCTAAATATGGAAATAATGACTTCATTAGCTCTCAAATTGGGCTTTCCACTATCTCCAGAAAATGATGAAGACCAAGACCATATTGTGAACCCTATAACCAAACAAGGGAGATCAACTCTTGTGTTCTTTTTGGCCTATAGACACACCCCAAAGGGGTAGTCTTGAGAATAGCACAAAAAAAATAGGGATTGCCAACTGTATATAGGGGGACACCCAAAGGGGTTTCATAGTCAGAGCAAATAGTTTAAGTCCTTTTTCATTTCTTCACCTTTTATTTTTTTTTCTTCAAATTTGAGGAAAAGTCCTCAAAATTAAGATTGTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00349	96343	99166	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP707A1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K09843	E1.14.13.93	EC:1.14.13.93	Carotenoid biosynthesis	map00906
			Carotenoid biosynthesis	map00906

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000349s00021101.1	PF00067.17	p450	36	444	1.10E-71
Glyur000349s00021101.2	PF00067.17	p450	36	159	3.00E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.752
SRR1783600	control	1.732
SRR1783602	moderate drought stress	6.568
SRR1811619	moderate drought stress	6.369

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.509
DRR006520	Root Summer glycyrrhizin high producing strain	6.259
DRR006521	Root Winter glycyrrhizin high producing strain	0.390
DRR006522	Root Winter glycyrrhizin high producing strain	0.377
DRR006523	Root Summer glycyrrhizin low producing strain	26.277
DRR006524	Root Summer glycyrrhizin low producing strain	26.553
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.828
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.831

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.464
SRR2868004	Drought Stress (root)	43.595
SRR2967015	Control (root)	69.645

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.588
SRR9715740	Leaf	4.017
SRR9715741	Leaf	4.279
SRR9715739	Root	22.039
SRR9715742	Root	60.093
SRR9715743	Root	54.569

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.616
SRR8749028	MeJA induced 9h	9.109
SRR8749029	MeJA induced 9h	8.770
SRR8749030	Uninduced	34.668
SRR8749031	Uninduced	1.917
SRR8749032	Uninduced	11.159

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.221
SRR8400027	Control - Root	28.507