Gene detail

Gene detail information of Glyur000349s00021100

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G31730.1	Adaptin family protein
NR	XP_007158079.1	hypothetical protein PHAVU_002G122300g [Phaseolus vulgaris]
Swissprot	tr\|Q8L7A9\|AP4E_ARATH	AP-4 complex subunit epsilon
trEMBL	tr\|V7CL42\|V7CL42_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW30073.1}

Sequence

Transcript Sequence

>Glyur000349s00021100.1
TCCCGCAAAATTTGATTGTTAATATAAAATTAATTTCACTGGCGCGAGAGCAACGAGGGAAAAATGGAATATTCACCAGTTCATAACCGACACTGTTTTTAAGTTCGTTTCTCACGTGACACTCTTTCAGTAGAGTCTTTCTGTTTCTCTCTGAAGCAGAAGCAGAGGGAGCAGTTGAAGAAGAAGACAATGGTCTCGGAGTGGCAATCGAAGGAGTTCGTGGATCTTGTGAAGTCCATCGGCGACGCTCAATCAAAGGCGGAGGAGGAACGCATCGTCATCGCCGAGGTCGAAACCCTAAAGCACCGCATGGCAAATTCCGAAAAAGCCCCTAATCGAAACAAAATGAAGGAGTACATAATTCGCCTCCTCTACGTTGAAATGCTCGGCCACNACGCTTCCTTCGGTTACATCCACGCCGTCAACATGGCACACCACCACTCCCTTCCACTCAAACGCACCGGTTACCTCGCACTCACTCTCCTACTCTCCGATCACCACCACCTCCTCCTCCTCGTCATCAACACCATCCACAAGGACCTTTCCTCCGACAACTANCTCGTCGTTTGCGCCGCACTCAACGCCGTTTCCAAGCTCCTAAACGACGACGCCGTTTCCGCCGTTCTCCCCCNCGTCGTCGAACTCCTCCGACACTCCAATGAGGCCGTAAGGAAGAAGGCACTCATGGCGCTCCACAGATTCCACACGAAATCACCTTCTTCCGTTTCACACTTGCTCTCTGCTTTCCGCGAGGGACTCTGTGATACCGACCCTGCGGTAATGGGTGCTGCTCTGTGCCCACTTTTTCATCTCGTGACACTCGATGCTGATTCTTACAAGGACCTCGTTGTTACCTTCGTCGGCATTCTCAAACAAGTCTTGGAACGCAGGTTGCCAAAGGCCTATAATTACCATCAAATGCCTGCTCCCTTCATTCAGGTTAAGTTGCTGAAAATACTGGCCTTGTTGGGGAGGGGAGACAAGCAAGCCAGTGAAAACATGTATGCCGTGCTTGAGGATGTAATGAGGAAGAGTGATTCATCCACTAATATTGGTAATGCTGTTTTTTACGAGTGTGTATGCNGTGTCTCTTCCATATATCCCAATCCTAAGCTACTAGAGGCTGCNGCGGATGTTGTTGCGAAATTTTTGAAGAGTGACAGTCATAATCTTAAGTATTTGGGTATTGATGCCCTTGGTCGGTTGATAAAGTCCAATGCCGCGGAACAACACCAACTGGTTGTCATTGACTGCTTAGAGGACNCTGATGATACCCTGAAGCGAAAAACTTTTGAACTGCTATACAAAANGACCAACTCCTCCAATGTGGAAGNGATTGTTGACCGTATGATTGATTACATGATTAGTATAAGTGATAACCGTTATAAAACCTATATAGCATCTCGATGTGTGGAACTTGCCGAGCAATTTGCACCAAGTAATCATTGGTTTATACAGACTGTGAATAAAGTTTTTGAGCATGCTGGAGATCTTGTGAATATTAAGGTGGCACATAATTTGATGCGANTGGTTGCTGAAGGATTTGAAGAGGATGATGATGATGCTGCAAATAGTCAGCTGAGATCATNTGCTGTTGAATCGTATTTACGCATTATTGGGGAGCCAAAGCTTCCGTCCATGTTTCTTCAAGTCATCTGTTGGGTTCTGGGGAAATATGGCACAGCTGATGGAAAGTATTCTGCTTCATACATTAGGGGAAAGTTATGTGATGTTGCAGAGGCATATTCTAATGATGAAAATGTTAAGGCTTATGCAATTTCAGCANTGATGAAAATTAATGCATTTGAATTAGCAGCAGGGAGGAAAGTGGAAGTGCTACCTGAGTTTCAATCTTTAATTGAAGAATTATTAGCNTCCCACTCTACAGATTTGCAGCAACGTGCTTATGAATTGCAAGCCCTTATTGTTTTGAATGCACAAGCTATTGAAACAGTAATGCCGCAAGATGCAAGTTGTGAAGACATTGAGGTCGATAAGAATATCCCTTTCCTCAATGGCTATGTCCAGCAGTCTCTGGAAAGGGGTGCTCAGCCCTACATTCCCGAGAATGAGCGCATTGNAAAAGGGAAGATGAACAACATTAGAAGCCAAGATCAGCATGAATCTTTGCAGCATGGTCTGAGATTTGAGGCATATGAACTCCCAAAGCCCCCAGTGCAATCAAAAGTTGCTCCATCCTCAACAGACATTGTGCCAGTACCTGAGGTATTGTATTCTAGGGAGACCCACCATATCTCATCAGAGGCTGGATCACCGGAGCTTAAGCTACGGCTTGATGGTGTTCGGAAGAAATGGGGCAAGCCAACCCACTCGTCCCCAACTTCATCTACCTCATATTCTACTAACCAAAAGCCAACTAATGAGGCCACTCAAGTGGACGGTGCAATAGCTGTCAATTCAAACATAAGAGATATTCATGATACTAGAAAGACACAGGTTGAGATTTCTTCAGAAAAGCAGAAACTCGCCGCTTCATTGTTTGGTGGTTCAACTAATCTTGAGAAAAGATCATCTACCAGTCAAAAGGTTCCAAAAGCTAGTCCTAGTGCTGCAGATAGATATCAGGGATCAAAGGCTGCGGTTGTACCCAATGAAGTATCTGCAGAGAAAACAATTCATCCACCTCCTCCTCTTCCTGATTTGCTTGACTTGGGTGAACCAGCAGTAACTACGGCTCCTCCCTCAGTAGACCCCTTAAAGCAATTAGAAGGACTTCTTGATCCAAGCATTAGTTCCACATCAAATCATAATGCAGGTGCTGCTACAAATGTGCCTGATATTATGACACTCTATGCAGAGACTACTGCAAGTAGGCAGAGTGGCAGTGGTGGCTATTCTATCCCTGTGAGTGGGGATAATGTAAATCTTTTATACGAGTTGTCAAATGCAGCTGTCAGAGCTACTAATGGAGAAATAAACGTGACGCCTTTGTCTCAATCTATGAAGGGCCCAAATGCTAAAGATTATTTGGAAAAGGATGCATTAGTGAAGCTGATGGGTGTGAACCCCTCAATTCAGAATCCCAACTTGTTCAGTGACTTGCTTGGCTAATCTGTTCACAAAGCCGATTATAAATTATGATGCTCTGCCTAAAGACATGATGCTTGTCGAGTTGCCTGAAGTGCGCCATTCAAAGTGTTATCAGGCATGGATGATTGCAGCCCCTTAGAATGGGGTGATTCAACAACCTGGATTGATGGCAAAACCATGTATATACATATACTCCTTGCAGTTN

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00349	81595	88814	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0016192 vesicle-mediated transport

cellular_component
GO:0030117 membrane coat

molecular_function
GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000349s00021100.1	PF01602.15	Adaptin_N	40	580	4.50E-76

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	38.476
SRR1783600	control	38.875
SRR1783602	moderate drought stress	40.124
SRR1811619	moderate drought stress	40.169

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.880
DRR006520	Root Summer glycyrrhizin high producing strain	9.539
DRR006521	Root Winter glycyrrhizin high producing strain	5.059
DRR006522	Root Winter glycyrrhizin high producing strain	4.580
DRR006523	Root Summer glycyrrhizin low producing strain	12.408
DRR006524	Root Summer glycyrrhizin low producing strain	12.415
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.861
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.937

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.983
SRR2868004	Drought Stress (root)	14.060
SRR2967015	Control (root)	14.981

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.426
SRR9715740	Leaf	2.739
SRR9715741	Leaf	1.844
SRR9715739	Root	4.423
SRR9715742	Root	11.862
SRR9715743	Root	10.481

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.072
SRR8749028	MeJA induced 9h	1.250
SRR8749029	MeJA induced 9h	0.542
SRR8749030	Uninduced	0.329
SRR8749031	Uninduced	0.469
SRR8749032	Uninduced	0.424

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.382
SRR8400027	Control - Root	25.020