Gene detail information of Glyur000349s00021099 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G45330.1 | 7.00E-30 | decapping 5-like |
| NR | XP_006573497.1 | 0 | PREDICTED: decapping 5-like protein-like [Glycine max] |
| Swissprot | tr|Q9FH77|DCP5L_ARATH | 2.00E-62 | Decapping 5-like protein |
| trEMBL | tr|I1J869|I1J869_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G35640.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00349 | 75727 | 80499 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000349s00021099.1 | PF12701.2 | LSM14 | 18 | 90 | 1.30E-29 |
| Glyur000349s00021099.1 | PF09532.5 | FDF | 391 | 483 | 1.20E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.554 |
| SRR1783600 | control | 5.764 |
| SRR1783602 | moderate drought stress | 3.862 |
| SRR1811619 | moderate drought stress | 3.776 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.917 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.787 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.578 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.516 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.178 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.218 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.099 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.920 |
| SRR2868004 | Drought Stress (root) | 0.520 |
| SRR2967015 | Control (root) | 0.804 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.451 |
| SRR9715740 | Leaf | 0.997 |
| SRR9715741 | Leaf | 0.184 |
| SRR9715739 | Root | 0.430 |
| SRR9715742 | Root | 0.665 |
| SRR9715743 | Root | 1.141 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.479 |
| SRR8749028 | MeJA induced 9h | 1.838 |
| SRR8749029 | MeJA induced 9h | 1.413 |
| SRR8749030 | Uninduced | 0.963 |
| SRR8749031 | Uninduced | 2.338 |
| SRR8749032 | Uninduced | 1.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.290 |
| SRR8400027 | Control - Root | 1.044 |