Gene detail

Gene detail information of Glyur000349s00021097

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G19380.1	0	Long-chain fatty alcohol dehydrogenase family protein
NR	AES95453.2	0	long-chain-alcohol oxidase FAO1-like protein [Medicago truncatula]
COG	YP_003835264.1	7.00E-70	glucose-methanol-choline oxidoreductase [Micromonospora aurantiaca ATCC 27029]
Swissprot	tr\|O65709\|FAO4A_ARATH	0	Long-chain-alcohol oxidase FAO4A
trEMBL	tr\|G7K421\|G7K421_MEDTR	0	Long-chain-alcohol oxidase FAO1-like protein {ECO:0000313\|EMBL:AES95453.2}

Sequence

Transcript Sequence

>Glyur000349s00021097.1
ATTTTAAAGCAAAACAAAAATAAGCATATGGAGGAAAATAATGGGGGAATAAGCCATATGATTAGAAATGGTAGTTCTAGAAAGGGTAGCTTTAGATTGGGTTTGGGAGTGAATAATAATATTATTGGACCAAGAGATCATCACCACACTGTGGTNGAGCTTGGTAGTATTGACACACAGAAACTTCTTCTAGCCAGTGGGGAGAGAGAGATCAAACAACAACAACCACCTCCCACCAACACACTTTCTCCCAGGCAGATGAAATCACTCACTGCTCTCTGNGACACTATCTTGCCTTCTGTTGTCAGTGATGACTTTGTTGGCCTCTCCGACGAATCTGTCGCCACCTTCTACAGAGTTTCAGCTTCCATGGCTGGAACACCTCAGCGTGTTGGGGGTTTGATAAGTGAGAGATTGAAACACCCAATGACATGGTTACTGAAGGTGGCGTTGTGGCTGCTGTCAACATGGTTTGGGACATTGGTATTTTGTGGCATAGCGTGCCTCTCAACCCACTTCCCTTTCATCCACACTTATCCTCACCTTCCTCTGCACAAACGCCAACACATTCTGCAGTCTTGGTCTCTCAGTTACTTTCGTCTCCTTAGGACGTTCTTCAGAACCATCAAACTCCTCACTCTCCTTGTCTTCTTCACTCAGCTAGATGAATCAGAAGACAATTGTACATGGAAGGCAATTGGATACTGTGGACCTGATCCAGAATTCAAAGCTCAGTTAAAGAACCATTTTTTACATGGAACATCCAAAGGAAAACATGAGGCTAAGGAAGATCANGATGATGATGATGATGTTACTGAAGGGGTCATAGGACCTCTTTACAAAGGCCTAGTCCATCTGAATTACCCACGAGACATCACTGCAAATGCTCTAAGACAATTTGGATTCCCNGTCTCAGTTATTCGAAGAAAGCCAAAAGCTTCTACTAACTTGTCANCACCATCTTTGGTTATACAATGTGATGCAGTGGTAGTTGGTTCTGGCTCAGGAGGTGGTGTGGTAGCTGGAGTGCTAGCAAAAGCTGGTTACAAAGTGTTGGTCTTGGAGAAAGGAGGCTATTCTGCTAGGAACAATCTTTCACTTCTTGAAGGACCAACNATGGATCAAATGTACCTCTCTGGTGGTTTGGTTGCAACTGATGACATGAGTGTGTTCATACTATCAGGATCCACAGTTGGTGGAGGGTCTGCAATAAACTGGTCTGCAAGCATTAAGACACCTCAGCATGTGTGCAAGGAGTGGTGTGAGAAAAATGGGCTAGAGTTGTTTGAGAGTGAGTTGTATAGAGAAGCCTTGGATGCTGTATGTGAGAAAATGGGAGTTCAATCTGAGATAGAAGAGGAAGGTTTCAACAATGCAGTATTGAGAAGAGGGTGTCAAGAAATGGGGTATCCGGTGAGCAACATACCGCGAAACTCTTCACCGGGTCACTACTGCGGATGGTGTCATATGGGGTGTAAGGATGGAAGGAAGAAAGGTACCTCAGAAACATGGTTGGTGGACTTGGTGAAATCTGGGAATGGAGCAATTCTTCCAGGTTGTGAGGCAATAAAAGTCTTGCATAAGAAAAAGAAAGGAAACAAAAAGACTGCATGTGGAGTAGCTTTTGAGTTTGAATACAAAGGGACTAAAGACATTTGTGTGGTGGAGTCAAAGGTCACAATTGTGGCATGTGGAGCATTAAGTACTCCAGCACTACTCAAAAGAAGTGGCTTGAAGAATAAGAACATAGGGAAACACTTGCATCTCCATCCAGTGGCAATGGCATGGGGCTACTTCCCAGATGCTGCACCTGCTAGTGCTACTGCATCATCCTCTGAGGTGTGGCCAGAGGCATGGAAAAAGAGCTATGAAGGAGGGATCATGACAGCAATGTCTCCTGTTGTTGCGGAGTTTGATAATTCCGGATACGGTGCATTGATCCAAACACCTGCATTGCATCCTGGTACATTCTCAATTGTCATGCCATGGGTTTCTGGAACNGATATGAAAGACCGGATGCGAAAGTTCTCAAGAACAGCTCATATATTTGCACTGGCAAGNGATCAAGGATCAGGGACCGTGNACTCGCCGAGCCNCATCGGTTATCGGATGGAAGGNGTAGATGAAGAGAATTTGAAGAAGGGGATTGATAAGGTACTAAGAATTCTAGCTGCAGCTGGAGCTGAAGAAATTGGAACACATCATAACAAGGGAAGGAAGTTAAATGTGAAGCAGGTGAGTTATCATGAGTTTGACAAGTTTGTTAAGGAGGAAAGTTCAAGGTCATTGAAAGATCTTTCAACACCACTTTGCTCAGCACATCAAATGGGGAGTTGTAGGATGGGTTCTGATCCAAAGGAATCAGTGGTGAATCAGAGAGGGGAGACATGGGANGTGGAGGACCTTTATGTTGCAGATGCAAGTGTGTTCCCCACAGCTTTGGGTGTGAATCCAATGGTCACTGTTCAGGCCATTGCTTACTGCACAGCACANTCTGTTCTTCAAGCTCTTAGAAGGAAAAGAAGTAGATGAAAAACAAAAATCTTTTGCTGCCTTTGTAGCTCCAATGGTACTGAATATTAAATTATTCATAGCATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00349	63606	69964	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0046577 long-chain-alcohol oxidase activity

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000349s00021097.1	PF00732.14	GMC_oxred_N	318	583	7.30E-63
Glyur000349s00021097.1	PF05199.8	GMC_oxred_C	691	818	4.30E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.338
SRR1783600	control	1.366
SRR1783602	moderate drought stress	0.643
SRR1811619	moderate drought stress	0.620

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.166
DRR006520	Root Summer glycyrrhizin high producing strain	0.162
DRR006521	Root Winter glycyrrhizin high producing strain	0.127
DRR006522	Root Winter glycyrrhizin high producing strain	0.125
DRR006523	Root Summer glycyrrhizin low producing strain	0.085
DRR006524	Root Summer glycyrrhizin low producing strain	0.085
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.621
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.308

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.571
SRR2868004	Drought Stress (root)	2.012
SRR2967015	Control (root)	0.868

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.389
SRR9715740	Leaf	8.475
SRR9715741	Leaf	5.807
SRR9715739	Root	0.172
SRR9715742	Root	0.602
SRR9715743	Root	0.494

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.205
SRR8749028	MeJA induced 9h	0.177
SRR8749029	MeJA induced 9h	0.540
SRR8749030	Uninduced	0.613
SRR8749031	Uninduced	3.291
SRR8749032	Uninduced	4.042

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.355
SRR8400027	Control - Root	3.952