Gene detail

Gene detail information of Glyur000349s00021095

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G19390.1	2.00E-64	Uncharacterised protein family (UPF0114)
NR	XP_004512336.1	1.21E-126	PREDICTED: uncharacterized protein LOC101492946 [Cicer arietinum]
COG	YP_003052086.1	2.00E-16	hypothetical protein Msip34_2317 [Methylovorus glucosetrophus SIP3-4]
trEMBL	tr\|G7K428\|G7K428_MEDTR	1.00E-118	Uncharacterized protein {ECO:0000313\|EMBL:AFK38558.1}

Sequence

Transcript Sequence

>Glyur000349s00021095.1
AAAAAATAGAAAGAAAGATGACTCTGACCCTCAAACCTCTCTCCCTGTAACTAGTGGCAGCAGAGCAGACAAAGGCAGATTCACCGAATTTAGTCACTGATGCTTATGTTCTCTCTCAGACACATACATGCTGCACANATTCCACTTAGATTTCCCATCTCCCTCTTCTTTCTCTGTTCTCAAGCACTGAACGAACGCTAACTGTACTTTTCCTTTTCGATTAACCATGAAACTGTCACAGACATTGGTGCGGATACCCTTCACTACCACATCACCACTATCAGCAGCGTCACCGCAAAGCCAAAATCCTATCTTGAGCTCAAATGGTAAAAGGGTCTCTGTGTTATGGTACAAAAGCCATAGATTCCCAAATTGCGCGTGCAGCAGCACGGGAGCTTCCGTTTCTTCACCATCGACTCCGCTTGTTGATTCNAATTCTGGTTTTGATCCCGTTGTAACTCAGAAGGTTCCAGGGAAGCTGGAAGGTGTAGAAGAGGGAATCGAGAAGGTGATTTATAGATGCCGGTTTCTTGCTATTCTGGGAGTTTTTGGGTCTCTAATTGGATCATTTCTGTGTTTCATCAGGGGCTGCACATTTGTTGCTGAGTCTTTTTTGGAATACTTTGTAAACCGCAGTAAAGTAATCCAAATGCTCATAGAGGCTCTTGGAACTGTGATGCTGGTCTTCGGGATGGGTCTCTACGAACTCTTTATCAGTAATCTTGACAGTGCAAGCTCTCTTCCAGATCAAAAACCTTCCAACAGATCAAATCTATTTGGCTTATTCACATTAAAGGAACGACCGAAATGGCTGGACATAAAAACCGTCAATGAACTGAAAACCAAGATCGGTCACGTCATAGTGATGTTGCTTCTGATTGGGTTGTTTGACAAAAGTAAGAAGGCTGCTATACAAACTCCTGTGGATTTGCTATGTTTCTGTGCTTCTGTCTTCCTTTCTTCTACTTGCCTGTTTCTGCTGTCTAAGCTGAATGAGNCTAAGTAATGACGTTTATACACACGTTCAAATTAATGTGAGCACTCTAAGAAAGTAAGGATAAAAGTGATACACATGCATGAAAAAAATAGTTGTCCTATAGTATTAACTTACTGTTATTCTGTATATATTAGGATGAATTTGCATCTATCTTGGTCTCTTTACCCTTTGTTCTGCTATTTTATTGTATCTCTTAACCAATCGCCTCATTTTGGAGGCTTCAAAATACAAAATTTCCCTTTTCTTCTTTAACTGGGCTGAAGANAATTCACG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00349	34901	39137	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000349s00021095.1	PF03350.11	UPF0114	95	224	2.00E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.724
SRR1783600	control	17.794
SRR1783602	moderate drought stress	22.644
SRR1811619	moderate drought stress	22.997

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.236
DRR006520	Root Summer glycyrrhizin high producing strain	27.328
DRR006521	Root Winter glycyrrhizin high producing strain	25.018
DRR006522	Root Winter glycyrrhizin high producing strain	24.638
DRR006523	Root Summer glycyrrhizin low producing strain	27.042
DRR006524	Root Summer glycyrrhizin low producing strain	26.238
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.185
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.155

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.541
SRR2868004	Drought Stress (root)	11.679
SRR2967015	Control (root)	15.572

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.685
SRR9715740	Leaf	23.026
SRR9715741	Leaf	14.754
SRR9715739	Root	6.430
SRR9715742	Root	12.572
SRR9715743	Root	12.628

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.863
SRR8749028	MeJA induced 9h	10.001
SRR8749029	MeJA induced 9h	7.306
SRR8749030	Uninduced	10.179
SRR8749031	Uninduced	5.741
SRR8749032	Uninduced	3.938

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.251
SRR8400027	Control - Root	16.259