Gene detail

Gene detail information of Glyur000349s00021092.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47570.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_004512441.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cicer arietinum]
COG	YP_001192956.1	2.00E-48	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|G7JB64\|G7JB64_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AES71116.1}

Sequence

Transcript Sequence

>Glyur000349s00021092.1
ATGTTCCTCAACCAAATGAAGCCCTTTTCACTCATGTTACATGCATTTTGGCCCACATGCCTTCACATACTACTGCTATTTACTCTGAACTCACATTGGTTTGGCCCAAACACAACTACTGTCAATGCATCAGGAAATGATACTGACCATTTGGCATTACTCAAGTTCAAGGAAGCAATATCCAGCGACCCATATGGAATCTTAGATTCTTGGAATGGTTCTACCCACTTCTGTGAGTGGCATGGAATCACATGCAGCTCTATGCATCAGAGAGTTACAGAGTTGAACCTACAAGGCTTTCGATTGCACGGATCCATATCTCCCCATGTTGGCAATCTCTCTTTCATGACTAACTTCAATATCATGAACAACAGTTTCTATGGAGTGATCCCACAAGAATTGTGTTATTTAGTACAACTGCAACAACTTTATCTCGAGAATAACTCTTTGGTTGGGGAAATTCCCACAAATTTGACAAGATGGTCTGATCTCAAAGGCTTGCACTTGTCAGGGAACAAACTGATTGGCAGAATACCAATTGAAATTGGCTCTCTTAGGAAGCTCCAAAAAGTATTCATTTATAACAACAATTTAACAGGAGAAATTCCACCATCTATAGGGAATCTTTCATCCCTTACTAATCTTAATGTGGGTTCCAATAACTTGGAGAGGAGTATTCTACAAGAAATATGCCACTTGAAAAACCTGGCAACGATAGCAGTGGGTATAAACAAGTTGTCTGGTAAACTTCCTTTTTGTCTTTACAACATGTCATCTCTCACTCTAATCTCTGTTCCTCTGAACCAATTTAATGGCTCTCTTCCACCAAATATGTTCCACACCCTTCCCAATCTCCAAACACTTTTCATCGGTGGGAATCAAATCTCAGGTCCAATCCCAACTTCCATCACAAACGCATCTGTCCTTCAAGCATTTGATATCACTCAAAACCAATTCACGGGACAAGTTCCAAGTCTTGGGAAGCTAAAAGATCTNGGGAACCTAGGTTTGGCTCTGAACAATATGGGAAGCAACTCAACTAAAGATTTGGAGTTTTTGAAGTCATTGACAAATTGTAGTAAGTTGTATGTGGTCGATATAGCTTACAATAATTTTGGAGGTCCTTTACCGAATTCCTTGGGAAACATGTCCAACAAACTCAATAGCCTATATCTTGGAGGCAATCATATATCAGGAAAAATTCCTGTGGCTTTAGGAAATNTAATTAGCTTATTTCTCTTGACCACGGAAGATAACCGTTTTGAAGGGNTGATTCCAACTTCTTTTGGGAAGTTTCANAGGATGCAATTGTTAGAATTGAGTGGAAACCAATTGTCANGAAATATACCGGCCTCCATAGGCAACNTCAGTCAATTGTTTTATTTGGGTTTAGGACGTAATATGTTAAAAGGAAATATTCCTCCAAACATAGGAAATTGCAAAAAGTTACAACATTTGGACCTTTCACAAAACAACCTTACAGGAACCATACCCTTAGAGGTTTTTAGTCTTGTCTCTTTAACAAAATTACTGGACTTGTCACGAAACTCATTTAGTGGTAGTGTAGGGGGAGAAGTGGGCATGCTAAAAAATATCGAAGTGCTGAATGTCTCTGAGAATAATCTGTCTGGTGATATTCCCGGAAGCATTGGAGACTGCATATCCTTGGAATACCTTCATCTGCGAGGAAATTCCTTCCATGGAGCCATACCATTCTCTTTGACTTCTCTCAAAGGTCTTCGACGTTTAGACCTATCACGAAACCACTTGTCTGGATCAATTCCTAAAGGTTTGCAGTATATTTCTTTCCTAGAATACTTGAATGTATCTTTCAACATGTTGGAAGGTGAGGTACCAACTGAAGGTGTCTTTCGAAATGCAAGTGAGGTGGCAGTATCTGGGAACAATAACCTTTGTGGAGGTATTTCAAAGCTGCATCTACCTCCATGCCCTGCCAAAGGTCAGAAACATGCAAAACGCCATAATTTCAAGTTGATAGCAGTGATAGTTAGTGTGGTTGCTTTCCTTTTTATACTTCTATTAATTCTAACTATCTACTGCATGAGGAAAAGGAACAAGAAACCATCTTCTGATTCATCAACAATTGACCAGCTAGCTAAGGTTTCGTATAAAAACCTATACAATGGAACCAATGGATTCTCAACAAGAAACTTGATAGGATCTGGAAACTTTGGCTCTGTTTATATAGGAACTCTTGATTCAAAAGATAAAGTTGTAGCAATAAAGGTTCTAAAACTTCAAAAGAAGGGAGCTCACAAGAGTTTCATTGTTGAATGCAATGCACTAAAAAATGTTAGGCATCGAAATCTAGTTAAGATTTTAACATGTTGTTCTAGTACAGATTACAAAGGTCTAGAATTTAAAGCTCTAATCTACGAGTACATGAAAAATGGAAGTTTAGAAAGTTGGTTGCATCCGGCATCAGAAATTGCAGATCCACAAAAAGCATTGAATCTTGAGCAAAGGTTAAATATTATTATTGATGTTGCTTCTGCATTTCATTATCTTCACTACGAATGTGAGCAACTTGTGATTCATTGTGATTTAAAGCCTAGCAATGTTCTTCTTGATGACTATATGGTAGCTCACGTGAGTGATTTTGGCTTAGCCAAGTTGCTCCCAAGTATTGGAGTCTCCATGATGCAAAGTAGCACAGTCGGAATAAAGGGGACAATTGGTTATGCTCCTCCAGAGTATGGAATGGGTTCTGAGGTGTCAATTGAAGGCGACATGTATAGCTTTGGAATTCTAGTTTTAGAGATGTTAACTGGAAGAAAACCCACACATGAAATGTTTGAAGACTCTCATAATCTCCATAATTATGTTAGATTGTCAATATCAAATGATCTTTTGAAGACCGTGGACCCGGCTATTCTCTGTAATGAGTTAGCACGGGCTACTGACAGTGGGAACCTTGGCATTCTGCATCCTAATGTAGAGAAATGCTTACTTTCACTTTTTAGTATTGCACTTGCCTGTTCAGTGGAATCACCAAAAGAAAGAATGAGTATGGTTGATGTCACAAGGGAGCTTAATATCATCAAAAGTTTCTTTCATACTTGTGTTTAA

Protein Sequence

>Glyur000349s00021092.1
MFLNQMKPFSLMLHAFWPTCLHILLLFTLNSHWFGPNTTTVNASGNDTDHLALLKFKEAISSDPYGILDSWNGSTHFCEWHGITCSSMHQRVTELNLQGFRLHGSISPHVGNLSFMTNFNIMNNSFYGVIPQELCYLVQLQQLYLENNSLVGEIPTNLTRWSDLKGLHLSGNKLIGRIPIEIGSLRKLQKVFIYNNNLTGEIPPSIGNLSSLTNLNVGSNNLERSILQEICHLKNLATIAVGINKLSGKLPFCLYNMSSLTLISVPLNQFNGSLPPNMFHTLPNLQTLFIGGNQISGPIPTSITNASVLQAFDITQNQFTGQVPSLGKLKDLGNLGLALNNMGSNSTKDLEFLKSLTNCSKLYVVDIAYNNFGGPLPNSLGNMSNKLNSLYLGGNHISGKIPVALGNXISLFLLTTEDNRFEGXIPTSFGKFXRMQLLELSGNQLSXNIPASIGNXSQLFYLGLGRNMLKGNIPPNIGNCKKLQHLDLSQNNLTGTIPLEVFSLVSLTKLLDLSRNSFSGSVGGEVGMLKNIEVLNVSENNLSGDIPGSIGDCISLEYLHLRGNSFHGAIPFSLTSLKGLRRLDLSRNHLSGSIPKGLQYISFLEYLNVSFNMLEGEVPTEGVFRNASEVAVSGNNNLCGGISKLHLPPCPAKGQKHAKRHNFKLIAVIVSVVAFLFILLLILTIYCMRKRNKKPSSDSSTIDQLAKVSYKNLYNGTNGFSTRNLIGSGNFGSVYIGTLDSKDKVVAIKVLKLQKKGAHKSFIVECNALKNVRHRNLVKILTCCSSTDYKGLEFKALIYEYMKNGSLESWLHPASEIADPQKALNLEQRLNIIIDVASAFHYLHYECEQLVIHCDLKPSNVLLDDYMVAHVSDFGLAKLLPSIGVSMMQSSTVGIKGTIGYAPPEYGMGSEVSIEGDMYSFGILVLEMLTGRKPTHEMFEDSHNLHNYVRLSISNDLLKTVDPAILCNELARATDSGNLGILHPNVEKCLLSLFSIALACSVESPKERMSMVDVTRELNIIKSFFHTCV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00349	1898	5123	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000349s00021092.1	PF08263.7	LRRNT_2	47	86	4.00E-11
Glyur000349s00021092.1	PF00560.28	LRR_1	187	209	0.97
Glyur000349s00021092.1	PF13516.1	LRR_6	282	300	1.6
Glyur000349s00021092.1	PF00560.28	LRR_1	482	503	0.0077
Glyur000349s00021092.1	PF12799.2	LRR_4	530	566	8.90E-07
Glyur000349s00021092.1	PF00560.28	LRR_1	580	598	0.059
Glyur000349s00021092.1	PF00069.20	Pkinase	723	946	1.00E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.253
SRR1783600	control	0.244
SRR1783602	moderate drought stress	0.367
SRR1811619	moderate drought stress	0.387

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.204
DRR006520	Root Summer glycyrrhizin high producing strain	0.247
DRR006521	Root Winter glycyrrhizin high producing strain	0.502
DRR006522	Root Winter glycyrrhizin high producing strain	0.485
DRR006523	Root Summer glycyrrhizin low producing strain	0.356
DRR006524	Root Summer glycyrrhizin low producing strain	0.300
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.075
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.190

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.184
SRR2868004	Drought Stress (root)	1.419
SRR2967015	Control (root)	1.163

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.011
SRR9715740	Leaf	0.197
SRR9715741	Leaf	0.011
SRR9715739	Root	0.024
SRR9715742	Root	0.010
SRR9715743	Root	0.002

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.224
SRR8749028	MeJA induced 9h	1.171
SRR8749029	MeJA induced 9h	0.128
SRR8749030	Uninduced	0.951
SRR8749031	Uninduced	9.180
SRR8749032	Uninduced	4.785

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.026
SRR8400027	Control - Root	0.063