Gene detail information of Glyur000348s00020050 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G03160.1 | 0 | FZO-like |
| NR | XP_004495203.1 | 0 | PREDICTED: uncharacterized protein LOC101505859 isoform X1 [Cicer arietinum] |
| COG | YP_001277839.1 | 2.00E-61 | dynamin family protein [Roseiflexus sp. RS-1] |
| Swissprot | tr|Q8GXU9|FAF2_ARATH | 7.00E-19 | Protein FANTASTIC FOUR 2 |
| trEMBL | tr|I1JFA7|I1JFA7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G16630.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00348 | 175369 | 183714 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000348s00020050.1 | PF01926.18 | MMR_HSR1 | 379 | 511 | 8.10E-18 |
| Glyur000348s00020050.2 | PF11250.3 | DUF3049 | 161 | 214 | 2.70E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.188 |
| SRR1783600 | control | 2.149 |
| SRR1783602 | moderate drought stress | 3.004 |
| SRR1811619 | moderate drought stress | 3.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.061 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.127 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.284 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.329 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.905 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.830 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 36.864 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 38.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.177 |
| SRR2868004 | Drought Stress (root) | 5.355 |
| SRR2967015 | Control (root) | 4.884 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 29.585 |
| SRR9715740 | Leaf | 35.241 |
| SRR9715741 | Leaf | 28.248 |
| SRR9715739 | Root | 0.395 |
| SRR9715742 | Root | 1.776 |
| SRR9715743 | Root | 1.559 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.537 |
| SRR8749028 | MeJA induced 9h | 3.737 |
| SRR8749029 | MeJA induced 9h | 2.611 |
| SRR8749030 | Uninduced | 3.530 |
| SRR8749031 | Uninduced | 2.119 |
| SRR8749032 | Uninduced | 2.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.020 |
| SRR8400027 | Control - Root | 4.821 |