Gene detail

Gene detail information of Glyur000348s00020049

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G63140.1	1.00E-155	chloroplast stem-loop binding protein of 41 kDa
NR	XP_003590649.1	0	MRNA-binding protein [Medicago truncatula]
COG	YP_007115728.1	3.00E-68	NAD-dependent epimerase/dehydratase [Oscillatoria nigro-viridis PCC 7112]
Swissprot	tr\|Q9LYA9\|CP41A_ARATH	0	Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic (Precursor)
trEMBL	tr\|G7IED1\|G7IED1_MEDTR	0	Stem-loop-binding protein of 41 kDa protein A {ECO:0000313\|EMBL:AES60900.1}

Sequence

Transcript Sequence

>Glyur000348s00020049.1
ATGGCCACGCTTTCTTCCTCTTCACCAACGCTGCTATTCTCTGCAACATCTTCCAACAACCGTCTCCCACTCTCACATTCTTCTACTCTGCGCCTTTCTTTCTCTTCTTCCCTCCATTCCTCCTCTCTATCANTTTCTCCCACCTCTCTAGCATACCCTTCTTCATGTTCTAGACGTTTTGCTACTCCTGCTGCCTTCAGCATCAGAGCCAGTGCTGCACAGAAGAAGAAAGTGCTGATCATAAATACCAACAGTGGTGGGCATGCCGTGATTGGCTTCTACTTTGCCAAAGAGCTTCTTGGTGCTGGCCACGCTGTCACCATACTCACTGAAATTGTTAGTGCTGGAGGCAGCACAGTATGGGGAAATCCGGCAGAAGTAGGGAGTGTTGTTGGAGGTGAAGCATTTGATGTGGTTTTGGACAACAATGGCAAGGATCTTGAGACTGTGAGGCCAGTGATAGATTGGGCCAAGAGTGCTGGTGCCAAGCAATTCCTGTTCATCAGTAGTGCTGGAATCTACAAACCAACGGATGAACCTCCTCATGTTGAAGGGGATGTTGTTAAAGCAGATGCTGGTCATGTTGGAGTGGAGAAATACATTGAAGAAACTTTCGAGAGTTGGGCAGTGTTCAGACCACAGTACATGATAGGGTCTGGCAACAACAAAGACTGTGAGGAGTGGTTCTTTGATAGGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCAGGATTGCAACTCACTAACATAGCTCATGTTAGGGACTTGTCCTCGATGCTTACTCTAGCTGTAGAGAACCCAGAAGCTGCAAATCATAGCATTTTCAACTGTGTGGGCGACCGTGCAGTGACTCTGGATGGAATGGCCAAACTGTGTGCTCAAGCTGCAGGGCGCCCAGTTAACATTGTGCATTATGATCCTAAAGCTGTTGGAATCGATGCAAAGAAGGCTTTCCCTTTCCGCAATATGCACTTCTATGCTGAACCTAGAGCAGCCAAAACTAAATTGGGATGGCGTTCAACCACAAACCTTCCTGAAGACCTCAAAGAAAGGTTTGAGGAGTACATAAAGATTGGGAGAGACAAGAAGCCCATCAATTTCGAGCTAGATGANAAGATATTAGAGGCCTTGAAAGTTCCAGTGTCTGTGTGATCCATTCATATCCAAAATGCATAAAAACGATTAGACAANATTGTAAGATTTCTGGTTATATAATTTAAATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00348	171871	174368	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000348s00020049.1	PF13460.1	NAD_binding_10	86	220	1.50E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.232
SRR1783600	control	0.141
SRR1783602	moderate drought stress	0.265
SRR1811619	moderate drought stress	0.324

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.392
DRR006520	Root Summer glycyrrhizin high producing strain	0.466
DRR006521	Root Winter glycyrrhizin high producing strain	0.387
DRR006522	Root Winter glycyrrhizin high producing strain	0.424
DRR006523	Root Summer glycyrrhizin low producing strain	0.359
DRR006524	Root Summer glycyrrhizin low producing strain	0.326
DRR006525	Leaf Summer glycyrrhizin high producing strain	664.859
DRR006526	Leaf Summer glycyrrhizin high producing strain	680.566

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.718
SRR2868004	Drought Stress (root)	4.876
SRR2967015	Control (root)	1.902

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	373.874
SRR9715740	Leaf	478.382
SRR9715741	Leaf	337.282
SRR9715739	Root	0.130
SRR9715742	Root	0.352
SRR9715743	Root	0.969

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.079
SRR8749028	MeJA induced 9h	0.056
SRR8749029	MeJA induced 9h	0.067
SRR8749030	Uninduced	0.059
SRR8749031	Uninduced	0.091
SRR8749032	Uninduced	0.094

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.722
SRR8400027	Control - Root	2.449