Gene detail information of Glyur000348s00020048 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G63130.2 | 0 | RAN GTPase activating protein 1 |
| NR | AFK36806.1 | 1.62E-16 | unknown [Medicago truncatula] |
| COG | YP_008340.1 | 3.00E-22 | hypothetical protein pc1341 [Candidatus Protochlamydia amoebophila UWE25] |
| Swissprot | tr|Q9LE82|RAGP1_ARATH | 0 | RAN GTPase-activating protein 1 |
| trEMBL | tr|I3S964|I3S964_MEDTR | 6.00E-17 | Uncharacterized protein {ECO:0000313|EMBL:AFK36806.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00348 | 165550 | 173611 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000348s00020048.2 | PF13943.1 | WPP | 62 | 158 | 8.60E-43 |
| Glyur000348s00020048.2 | PF13516.1 | LRR_6 | 263 | 281 | 0.35 |
| Glyur000348s00020048.2 | PF13516.1 | LRR_6 | 318 | 339 | 0.46 |
| Glyur000348s00020048.2 | PF13516.1 | LRR_6 | 403 | 423 | 0.43 |
| Glyur000348s00020048.2 | PF13516.1 | LRR_6 | 430 | 449 | 0.46 |
| Glyur000348s00020048.2 | PF13516.1 | LRR_6 | 458 | 479 | 0.38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.737 |
| SRR1783600 | control | 14.739 |
| SRR1783602 | moderate drought stress | 9.541 |
| SRR1811619 | moderate drought stress | 9.558 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 38.626 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 38.355 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.677 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.341 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 60.510 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 59.974 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.333 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 43.629 |
| SRR2868004 | Drought Stress (root) | 28.458 |
| SRR2967015 | Control (root) | 31.039 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 32.900 |
| SRR9715740 | Leaf | 25.814 |
| SRR9715741 | Leaf | 32.777 |
| SRR9715739 | Root | 18.619 |
| SRR9715742 | Root | 63.063 |
| SRR9715743 | Root | 55.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 73.667 |
| SRR8749028 | MeJA induced 9h | 97.164 |
| SRR8749029 | MeJA induced 9h | 63.425 |
| SRR8749030 | Uninduced | 33.222 |
| SRR8749031 | Uninduced | 35.588 |
| SRR8749032 | Uninduced | 28.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.391 |
| SRR8400027 | Control - Root | 29.813 |