Gene detail

Gene detail information of Glyur000348s00020046

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G63200.1	4.00E-141	PATATIN-like protein 9
NR	XP_007144637.1	0	hypothetical protein PHAVU_007G172300g [Phaseolus vulgaris]
COG	YP_006866470.1	9.00E-34	patatin-like phospholipase [Psychroflexus torquis ATCC 700755]
Swissprot	tr\|Q93ZQ3\|PLP9_ARATH	0	Probable inactive patatin-like protein 9
trEMBL	tr\|V7BJA4\|V7BJA4_PHAVU	0	Patatin {ECO:0000256\|RuleBase:RU361262}

Sequence

Transcript Sequence

>Glyur000348s00020046.1
ATGGAGCTCAGTAAAGTGACCCTTGAGATCTTCTCCAAACTGGAACAGAAATGGCTCTCTCACTGTAAAGACACCAACAAAACACGCATTCTCAGCATTGATGGCGGAGGAACCACCGCCATTGTCGCCGGCGCTGCCCTAATCCACCTCGAGGATCAGATCCGTCTCCAGACCTCCGATCCCCACTCTCAGGTGGTGGATTTCTTCGACATCGTCGCCGGTACCGGCATTGGCGCCATTCTCGCCGCCATGATCACCGCGTCCGATGCCTTCGGAAGGCCTCTCTATACAGCCAGAGAAGCCGTCCGTATCGTTACCGAGAGGAACGCCGAACTCTACAAGCTGAAATCCGCCGGAGTGTTTCGCCGGCGCCGGAGATTCTCTTCGAGGAGCATGGATAGCGTGTTGAAGCAAGTGTTCCAGAGGAAAGAGGAGGGACGGATGTTGACCTTGAAGGACACGTGTAAACCGCTGCTTATCCCTTGCTTTGACCTCAAGAGTTCGGCGCCATTCGTCTTTTCTCGAGCCGATGCGTCCGAATCTCCAAGCTTCGACTTCGAGCTATGGAAAGTGTGCCGCGCCACGTCGGCGACGCCGAGCCATTTCAAGCCCTTCCAGTTCGCTTCTGTCGACGGCAAGACCTCTTGCTCCGCCGTGGACGGCGGCCTGGTGATGAACAATCCTACGGCGGCGGCCGTCACGCACGTTCTCCACAACAAGCGCGATTTCCCGGCTGTGAACGGCGTCGAGGACCTATTGGTCCTTTCCTTGGGTAACGGATCTTCGAGCGCGAAGGCATGCGAGAACCGCACGTGCTCCACGCCGTCGGTGGTTGACATTGTGCTCGATGGTGTTTCCGAGACCATTGACCAGATGCTGGGGAACGCATTCTGCTGGAACCGTACGGACTACGTCAGAATCCAGGCGTTCGGTTTGGGAAGTGATGCGATGAGGAAGGAAAGAGGGACGGAAACGGAAGAGGAGGTGCTGAAAGAGAAGGGACTGGAGTCGTTACCGTTTGGCGGGAAGCGGTTACTGACGGAGACTAACGGAAACAGAATCGATAGCTTCGTGCAACGTCTTGTTGCTACCGGAAAACCCAGCCCGCCGTCTAGTCCCTGCAAGGATTCCGCCGTCACCTCTCTCGCTAACGGCCGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00348	154540	155868	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006629 lipid metabolic process

GO:0008152 metabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000348s00020046.1	PF01734.17	Patatin	31	232	1.30E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.456
SRR1783600	control	8.557
SRR1783602	moderate drought stress	5.332
SRR1811619	moderate drought stress	5.057

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.476
DRR006520	Root Summer glycyrrhizin high producing strain	10.974
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	11.120
DRR006524	Root Summer glycyrrhizin low producing strain	11.162
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.415
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.398

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.210
SRR2868004	Drought Stress (root)	6.926
SRR2967015	Control (root)	11.659

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.228
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.741
SRR9715739	Root	24.981
SRR9715742	Root	16.687
SRR9715743	Root	18.661

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	45.259
SRR8749028	MeJA induced 9h	6.144
SRR8749029	MeJA induced 9h	4.525
SRR8749030	Uninduced	0.521
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.730

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.696
SRR8400027	Control - Root	14.421