Gene detail

Gene detail information of Glyur000348s00020045

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G63190.1	2.00E-67	ribosome recycling factor, chloroplast precursor
NR	XP_007144638.1	2.28E-131	hypothetical protein PHAVU_007G172400g [Phaseolus vulgaris]
COG	YP_007102900.1	1.00E-58	ribosome recycling factor [Pseudanabaena sp. PCC 7367]
Swissprot	tr\|Q9M1X0\|RRFC_ARATH	8.00E-103	Ribosome-recycling factor, chloroplastic (Precursor)
trEMBL	tr\|V7BFL8\|V7BFL8_PHAVU	8.00E-132	Uncharacterized protein {ECO:0000313\|EMBL:ESW16632.1}

Sequence

Transcript Sequence

>Glyur000348s00020045.1
GTTGATGATGTGTACATGTACACATCGGAGTTGAGAGCGGTTGTGGTATGAGAGGACATTGTTATCCAAAGAGACCACAACAACAACACAAGGCGTAGGTTGTGTCTCTCTCAATTCATGGCAACCTCTTTCTCTCCGACAACTCCGGTCCGCTCCATCTTCCAACCACACCCAAACCCTCCCAAAACCCTTCTCTCCCTTCCTGCTCATGAATCCTCTTACAGTTTCAAACGCTCATGGACCCCTGCTGCAAGCTATGCCACTCTAAAGCTCCCTCGTGGCCTCACACTCTCTGGCAGAAGCAGACCCCTCCTCTCTAAAGGGCTGTCGCGTAGGAGAATGGGANTTGTGAGGGCTGCTACTATTGAAGAAATAGAAGCAGAAAAGGCATCCATTGAGAAAGATGTTAAAAACAGGATGGAAAGGACTATCGAAAATGTTCGGTCCAATTTCAATTCCATAAGAACTGGGAGAGCAAACCCAGCTATGCTTGACAAAATTGAGGTGGAATACTATGGATCTCCAGTTAGCTTGAAGACCATTGCTCAAATTAGCACTCCTGATGCCAGTTCTCTTTTGGTACAGCCATATGACAAATCAAGCTTGAAGGATATAGAGAAAGCCATAGTTAACTCTAATCTTGGTATGACTCCTAATAATGATGGAGAATTGATACGATTGAGTGTTCCTCAGTTGACATCTGAAAGAAGGAAGGAACTATCAAAGGTAGTTGCTAAACAAGCTGAAGAAGGGAAGGTGGCTTTAAGGAATATAAGAAGAGATGCGTTGAAAGCTTATGAAAAACTTGAAAAGAAGCTGACAGATGACCATATAAAGAAGGTTGATACCATCTTCAAACAGAAAGAAAAGGAGTTGCTGACAGTTTGATGCTTTGGTACAAAAAAAATAATTGTATTTGAGTTCTATCTATAGAAGGTCAAATTTTGTGTCTACTTTGCTCTGAGTTGGATAATTGATGCAAATGTTTATTTGTTATACGGAAGACAACTTTTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00348	140980	145769	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000348s00020045.1	PF01765.14	RRF	108	253	1.70E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.042
SRR1783600	control	8.950
SRR1783602	moderate drought stress	9.201
SRR1811619	moderate drought stress	9.359

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.695
DRR006520	Root Summer glycyrrhizin high producing strain	12.109
DRR006521	Root Winter glycyrrhizin high producing strain	10.208
DRR006522	Root Winter glycyrrhizin high producing strain	10.727
DRR006523	Root Summer glycyrrhizin low producing strain	11.042
DRR006524	Root Summer glycyrrhizin low producing strain	11.209
DRR006525	Leaf Summer glycyrrhizin high producing strain	87.601
DRR006526	Leaf Summer glycyrrhizin high producing strain	86.081

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.713
SRR2868004	Drought Stress (root)	21.798
SRR2967015	Control (root)	18.590

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	117.349
SRR9715740	Leaf	188.631
SRR9715741	Leaf	104.797
SRR9715739	Root	1.716
SRR9715742	Root	7.996
SRR9715743	Root	5.442

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.782
SRR8749028	MeJA induced 9h	8.721
SRR8749029	MeJA induced 9h	13.787
SRR8749030	Uninduced	8.300
SRR8749031	Uninduced	6.875
SRR8749032	Uninduced	12.805

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.079
SRR8400027	Control - Root	23.181