Gene detail information of Glyur000348s00020044 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22380.1 | 6.00E-32 | time for coffee |
| NR | XP_003520207.1 | 0 | PREDICTED: protein TIME FOR COFFEE-like isoform X1 [Glycine max] |
| Swissprot | tr|Q94KE2|TIC_ARATH | 2.00E-51 | Protein TIME FOR COFFEE |
| trEMBL | tr|I1JFA0|I1JFA0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G16580.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00348 | 128346 | 134008 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 42.476 |
| SRR1783600 | control | 42.776 |
| SRR1783602 | moderate drought stress | 57.370 |
| SRR1811619 | moderate drought stress | 57.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 27.828 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 28.057 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 30.237 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 29.754 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 47.540 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 43.890 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.014 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.836 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 49.291 |
| SRR2868004 | Drought Stress (root) | 46.370 |
| SRR2967015 | Control (root) | 50.235 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.339 |
| SRR9715740 | Leaf | 6.581 |
| SRR9715741 | Leaf | 9.551 |
| SRR9715739 | Root | 8.012 |
| SRR9715742 | Root | 30.532 |
| SRR9715743 | Root | 24.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 69.623 |
| SRR8749028 | MeJA induced 9h | 122.637 |
| SRR8749029 | MeJA induced 9h | 79.719 |
| SRR8749030 | Uninduced | 58.072 |
| SRR8749031 | Uninduced | 77.298 |
| SRR8749032 | Uninduced | 65.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 39.541 |
| SRR8400027 | Control - Root | 39.943 |