Gene detail

Gene detail information of Glyur000348s00020041.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G02730.1	2.00E-137	Transducin/WD40 repeat-like superfamily protein
NR	XP_004495198.1	0	PREDICTED: WD repeat-containing protein 5-like [Cicer arietinum]
COG	YP_001864889.1	3.00E-63	hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q8W1K8\|MUT11_CHLRE	3.00E-80	Protein Mut11
trEMBL	tr\|A0A0A0K8V6\|A0A0A0K8V6_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN44807.1}

Sequence

Transcript Sequence

>Glyur000348s00020041.1
CCTAAATAACCCAGGTGGTGTTTGGACTTTGGAAGTTTGGATAGAAATTATGAATTTAATTAATTAAAATAGAGAGGCAAAGAAGAGCGAGGCGTCAATGGCGACGAGCACGAGCAGCAGCAGCAACCAACCATACAGGCCGTACCGGCACCTGAAAACCCTAACGGCACACGAACGCGCCGTTTCGTGCGTGAAGTTCTCTAACGACGGGACCCTACTCGCCTCTGCTTCCCTCGACAAAACCCTAATAATATGGTCCTCCGCCACCCTCTCCCTCCTCCACCGCCTCACCGGCCACTCCGAGGGCGTCTCCGACCTCGCCTGGTCCTCCGACTCCCACTACATATGCTCCGCCTCCGACGACCGCACCCTCCGCATCTGGGACGCCACCGGCGGCGACTGCGTCAAGACCCTCCGCGGCCACTCCGACGCCGTCTTCTGCGTCAACTTCAACCCCCAGTCTAACTACATCGTCTCCGGCTCCTTCGACGAGACCGTTAGGGTTTGGGAGGTTAAGACCGGCAAGTGCATCCACGTCATCAACGCACACGCCATGCCAGTTACCTCCGTTCACTTCAACCGCGACGGTTCCCTCATCGTTTCCGGAAGCCACGATGGCTCTTGTAAGATTTGGGATACCAGCTCCGGTACTCTGTTGAAGACCCTCATTGACGATAAGCTCCCTGCTGTCTCCTTCGCCAAGTTCTCCCCCAACGGCAAATTCATACTCGTTGCCACTCTCAATGACACCCTTAAGCTATGGAACTACTCGGCTGGGAAGTTTTTGAAAATATATTCGGGGCATGTGAACAGAGTGTACTGCATAACCTCCACATTTTCCGTGACAAATGGGAAATACATTGTTAGCGGTTCAGAGGATCGCTGTGTTTATTTGTGGGATCTTCAGCAGAAAACTATGGTTCAGAAACTTGAAGGCCATACAGATACTGTAATATCCGTTACCTGTCACCCAACAGAGAACAAAATTGCTTCCGCTGGCCTTGATGGNGATAGAACTGTGAGGGTTTGGGTACAGGATTCTTGAATAATAGTAGCAAAACTGTAAGGGGATATTGTCCTCTTATGTCACACAATACAATTTGATATTGTCCCCAACTACATGCCTCTTTTTGATGGTTGATGTATTACAGTCGTCGTATTTTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00348	118176	120388	-

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000348s00020041.1	PF00400.27	WD40	19	54	2.00E-11
Glyur000348s00020041.1	PF00400.27	WD40	60	96	8.90E-12
Glyur000348s00020041.1	PF00400.27	WD40	100	138	4.80E-13
Glyur000348s00020041.1	PF00400.27	WD40	142	180	5.10E-11
Glyur000348s00020041.1	PF00400.27	WD40	198	223	0.06
Glyur000348s00020041.1	PF00400.27	WD40	227	268	3.10E-07
Glyur000348s00020041.1	PF00400.27	WD40	274	311	3.70E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.130
SRR1783600	control	27.506
SRR1783602	moderate drought stress	34.719
SRR1811619	moderate drought stress	35.105

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.596
DRR006520	Root Summer glycyrrhizin high producing strain	22.753
DRR006521	Root Winter glycyrrhizin high producing strain	30.842
DRR006522	Root Winter glycyrrhizin high producing strain	30.534
DRR006523	Root Summer glycyrrhizin low producing strain	23.383
DRR006524	Root Summer glycyrrhizin low producing strain	23.764
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.533
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.700

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.727
SRR2868004	Drought Stress (root)	16.257
SRR2967015	Control (root)	17.285

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.815
SRR9715740	Leaf	15.387
SRR9715741	Leaf	18.419
SRR9715739	Root	26.340
SRR9715742	Root	19.739
SRR9715743	Root	17.976

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.206
SRR8749028	MeJA induced 9h	14.332
SRR8749029	MeJA induced 9h	17.490
SRR8749030	Uninduced	18.723
SRR8749031	Uninduced	14.628
SRR8749032	Uninduced	14.284

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.367
SRR8400027	Control - Root	12.962