Gene detail information of Glyur000348s00020034 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G14860.1 | 1.00E-17 | ovate family protein 11 |
| NR | XP_003590633.1 | 2.47E-91 | Ethylene receptor [Medicago truncatula] |
| Swissprot | tr|F4I8R6|OFP12_ARATH | 2.00E-25 | Transcription repressor OFP12 |
| trEMBL | tr|G7IDP8|G7IDP8_MEDTR | 9.00E-92 | Ovate transcriptional repressor {ECO:0000313|EMBL:AES60884.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00348 | 86860 | 87579 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | OFP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000348s00020034.1 | PF04844.8 | Ovate | 173 | 236 | 6.10E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.209 |
| SRR1783600 | control | 4.495 |
| SRR1783602 | moderate drought stress | 1.493 |
| SRR1811619 | moderate drought stress | 1.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.452 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.448 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.460 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.307 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.459 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.372 |
| SRR2868004 | Drought Stress (root) | 9.227 |
| SRR2967015 | Control (root) | 11.561 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.554 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 1.164 |
| SRR9715742 | Root | 0.893 |
| SRR9715743 | Root | 0.987 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.547 |
| SRR8749028 | MeJA induced 9h | 19.022 |
| SRR8749029 | MeJA induced 9h | 30.327 |
| SRR8749030 | Uninduced | 2.589 |
| SRR8749031 | Uninduced | 2.476 |
| SRR8749032 | Uninduced | 3.233 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.100 |
| SRR8400027 | Control - Root | 2.959 |