Gene detail information of Glyur000348s00020033 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22490.1 | 3.00E-61 | Seed maturation protein |
| NR | XP_003590628.1 | 4.36E-141 | Late embryogenesis abundant protein D-34 [Medicago truncatula] |
| Swissprot | tr|P09444|LEA34_GOSHI | 2.00E-83 | Late embryogenesis abundant protein D-34 |
| trEMBL | tr|G7IDP3|G7IDP3_MEDTR | 2.00E-141 | Late embryogenesis abundant D-like protein {ECO:0000313|EMBL:AES60879.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00348 | 72499 | 73677 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000348s00020033.1 | PF04927.7 | SMP | 20 | 76 | 6.90E-16 |
| Glyur000348s00020033.1 | PF04927.7 | SMP | 135 | 194 | 3.80E-21 |
| Glyur000348s00020033.1 | PF04927.7 | SMP | 210 | 252 | 6.70E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.810 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.220 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.194 |
| SRR2868004 | Drought Stress (root) | 0.252 |
| SRR2967015 | Control (root) | 0.101 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.684 |
| SRR9715740 | Leaf | 0.553 |
| SRR9715741 | Leaf | 2.332 |
| SRR9715739 | Root | 2.467 |
| SRR9715742 | Root | 3.014 |
| SRR9715743 | Root | 3.320 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.231 |
| SRR8749028 | MeJA induced 9h | 0.205 |
| SRR8749029 | MeJA induced 9h | 0.149 |
| SRR8749030 | Uninduced | 0.086 |
| SRR8749031 | Uninduced | 0.266 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.507 |
| SRR8400027 | Control - Root | 0.092 |