Gene detail

Gene detail information of Glyur000348s00020029

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G22550.1	3.00E-28	Protein of unknown function (DUF581)
NR	XP_007144648.1	2.26E-85	hypothetical protein PHAVU_007G173400g [Phaseolus vulgaris]
trEMBL	tr\|V7BFR0\|V7BFR0_PHAVU	8.00E-86	Uncharacterized protein {ECO:0000313\|EMBL:ESW16642.1}

Sequence

Transcript Sequence

>Glyur000348s00020029.1
GCAAAAGCAAAACTTTGAAGTATTAACGTTTGATTTTCATGCACACAACATCTTTTGCTTTTTCTTCCATTAAAAGCCATTCAGGCATCTCTCACTCTATTCCATGTCGAAANCTTCCCTCTTTTTCTCCTCTTTCTGTTTGCTGTCCAGAAAGTTTCAGAGTTAAAGCTGAAAAATAAACCTGTTTATTAACAAGCCCAATGTTGCAGTAACAACATAGCTTGCACGCGGGTGATTATGATGGGAATAACACCCATACTTTTTTTTTCTTCTTCAAGTAAATTAATAAGGGCAAAGAACAATTCAGTTACCTAGCCTGACAGTTTCAGCTCATCACCACCTTTATTTGGCTCTGTGTCAAAAANAATTCTTCAGAAACATTCCCAGTAGTACACTAGGACTCTTTTTCCTTATTAGAGTCCTAAAAGTACCCTGAACCTCAAGTGTATGAAAGTTTGTTCATTTTTGTTTTTGGAAATTGTAGNCTGCGTCAATCAGAGTTGTTTGTTCTCTTTGTAACATCTTTCTAGCTATTTTGGGTTTCAGCATAGCAGTGTTGGGAGAAAGTAACCAAGCCAAGTTTGATGGGTGATAATNGCTCCCAGCAATCTCCAAATCAGAATTACGCTAGAAGTACTGTCCCATCTCTATTCAGGGATTTCACCATGAAGGGTCTCTCAGGAGCTGAGGCTTTGAGAAGCCCAACATCAATTCTTGACACCAGATCAGCATTATCCCCATTAGGGACCGAAGCTATTAGCTCCCCAAGAATAATGCAATCAGAAAACAGAAGCTCGTGCAAGGACAAGGTGGATGATTCAAATGGCATAATTGGCCTTGCTCTTGTGGGTACACTCAAAGATGAGCCTTTTCATCACAATTCTGCTAAATTATTAAGTAGCAGAAAAGTCCTGTTTGGAACTAAGCTCAGGNTGAAAATCCCTCCCCTGCTTCCACCTTCCCCGTTCGAATCTAAAACATGTGNTGCTGCAGATTTTGGTGCCAAAACCAATGATTCGCGAAACAAAGGAATTTATAATGCAAAAGATTCTCCACCAGCAGTTGCTAATACTGGTGTTCTGAGTTTGAGTGAGATGGAACTTTCTGAGGAGTACACATGTGTGATATCCCATGGAACTAATCCAAGAACAACCCATATATTCGATAATTGTGTTGTGGAGGGACACTTTTATGTGCCCAATAAGTACCCGCAATCTCCTTCAGGGAATTTCCTTAACTTCTGTTACACTTGCAAGAAGCATCTTGAGCAGACAAAGGACATCTTTATTTACAGAGGAGAAAAGGCTTTCTGCAGTCAAGAATGTCGCCACCAAGAGATGGTGTTAGATGGAGCAGAAGTTTAAGAATTTGATAGATGCTAGTAATGGCCATTCTTCACTTCAATTATCTCTTATGTCTTTTCTACTTCCACCGCGGCCTCAAAGTTATTATGCAAATTGATGAGGATAATTAATCAGCTAGTCACAATTTTCAGTACTTGGTTAGGATTTCTACATGATATTTCGTTGTGACCAGCATATTCATTTTCACCTTTTGAAGTTTGTTTTTTTTGGGTGTCCCCCTCTCCCCTGCAAATAGAGATAAGAGAGGATGTAGAGTTCATTTCAAGAAATGAGTAATTTTTAGATTGCTTCTTGTTTTCCCCTTTGTTTTCGGCTGAAGCAGATGACGATGACGANGATATTGATATGACTGAAAATTAGTGCCTTTTTCTTCCATTCTTATCTGAGTTGTTGATGATGTTGCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00348	53381	55518	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000348s00020029.1	PF04570.9	DUF581	207	257	5.50E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	35.648
SRR1783600	control	35.909
SRR1783602	moderate drought stress	42.518
SRR1811619	moderate drought stress	42.005

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.349
DRR006520	Root Summer glycyrrhizin high producing strain	42.700
DRR006521	Root Winter glycyrrhizin high producing strain	0.451
DRR006522	Root Winter glycyrrhizin high producing strain	0.430
DRR006523	Root Summer glycyrrhizin low producing strain	39.333
DRR006524	Root Summer glycyrrhizin low producing strain	38.977
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.171
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.933

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.717
SRR2868004	Drought Stress (root)	12.651
SRR2967015	Control (root)	27.314

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.350
SRR9715740	Leaf	9.612
SRR9715741	Leaf	8.518
SRR9715739	Root	18.945
SRR9715742	Root	12.512
SRR9715743	Root	13.521

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.079
SRR8749028	MeJA induced 9h	0.166
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.233
SRR8749031	Uninduced	0.227
SRR8749032	Uninduced	0.297

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.147
SRR8400027	Control - Root	18.498