Gene detail

Gene detail information of Glyur000347s00029055

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04520.1	5.00E-96	plasmodesmata-located protein 2
NR	XP_006605755.1	6.59E-169	PREDICTED: cysteine-rich repeat secretory protein 3-like isoform X2 [Glycine max]
Swissprot	tr\|Q6NM73\|CRR3_ARATH	1.00E-133	Cysteine-rich repeat secretory protein 3 (Precursor)
trEMBL	tr\|C6TBR8\|C6TBR8_SOYBN	2.00E-169	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU19270.1}

Sequence

Transcript Sequence

>Glyur000347s00029055.1
CAAAAACAAATCTCTTGGGCTCCTCATTGGGTATGGGGGGATCAAAGAATCCAACCACAACTCTTCATTTCTCTTATACCCTTNGAACTTTAAAGTGTTTTCCTCAAATTATCATGATTTGATCCCTTAACACTACTACTCTAAATGGGTTTCACTCTGAAACCCAAGTTCCTTCCTTTTTTCTTGCTTCTGTTCACAAATCTTAACCCACCCCATTTCGCAGAACCTGCTTCTTCTGATTACACTACCTTGGTCTACAAGGGCTGCTCAAAGGAGACATTCACAGATCCAAATGGTGTATACTCCCAATCACTCTCTGCACTCTTTGGTTCACTGGTTTCACAATCCACCAAAACCAAGTTCTATAAATCCACTTCTGGCAATGGCCAAAATAGCATAACTGGTCTCTTCCAATGTAGAGGGGATCTCACCAATTCTGATTGCTACAANTGTGTCAGCAGGCTCCCAGTTCTGTCTGACAAACTTTGTGGCAAAACCATAGCTGCAAGAGTTCAACTACTAGGTTGTTACCTACTTTATGAGGTTGCTGGGTTTTCTTCCCAAATCTCAGGGATGCAGATGTTGTATAAGACTTGTGGGGCAGCAAATAGTGCTGCTGCTACAGAGAAAAGGGACACTGCATTCTCTGNGATGGAAAATGGGGTGGTTAGTGGCCATGGTTTTTACACAACTAGTTATCAGTCTTTGTATGTGTTGGGGCAGTGTGAGGGAGATGTTGGTGACTCAGATTGTGGACAGTGTGTGAAGAATGCTGTTCANAGAGCTCAAGTTGAATGTGGTAGCTCTATTTCAGGACAAGTGTTTTTGCACAAGTGCTTCATTAGTTATAGCTATTACCCCAATGGGGTTCCATCTAGATCATCTTCATCTTCATCTGCATCATCATCATCATCTTCTTCATACTCCTCATCTTCTTCAGGGAATCCAGGGAAAACAGCGGCTATAATACTAGGAGGGGTAGCTGGAGTGGCATTTTTGGTTATATGCTTGCTATTTGTTAGGAATTTGAAAAAGAAACATGATGGTATGAGTTATATGCGGCAATGAGGAGTGATGGATATATCATTCATCAGTTCCTCAATTTTATGTTTTATGCTCTTTTTGCTAACCCAATTCTATGTTTTGACTCTCATTTTGCATTGTCATTATCTTGCACAGATTATTGACGGCAGAAAATGATTTGTGAGAAGGCAAAAATTCTTCTTGTGATGAATTAATTGTATGGATGAAACANGGAAATTTTGTGGTAAATAATAGAGCTTGCTTGGTACAGAGAGAATATTGGATGATGCTTCAGTGTAATGATTGTTGTAGTTAGATATATCATAAGATCTTGTTGNTGGGAAGAGCAATGTGATTATGGAAGTGCTGATTTTTTTTTTTTCTTAACAAAGGGTTAAAATTACCCTATGGAATGAATGTTTTGTCATCCCCTTGAGCCATGTGGGTGATTCTCTTTTCCATCATCTTGATACTATTTTTATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00347	158653	160430	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000347s00029055.1	PF01657.12	Stress-antifung	39	134	1.10E-19
Glyur000347s00029055.1	PF01657.12	Stress-antifung	155	238	2.90E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.096
SRR1783600	control	14.071
SRR1783602	moderate drought stress	10.954
SRR1811619	moderate drought stress	11.140

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.107
DRR006520	Root Summer glycyrrhizin high producing strain	5.752
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.391
DRR006524	Root Summer glycyrrhizin low producing strain	1.397
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.974
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.099

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.110
SRR2868004	Drought Stress (root)	2.772
SRR2967015	Control (root)	1.814

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.460
SRR9715740	Leaf	3.136
SRR9715741	Leaf	1.322
SRR9715739	Root	2.814
SRR9715742	Root	1.763
SRR9715743	Root	2.210

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.042
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.947
SRR8400027	Control - Root	11.064