Gene detail

Gene detail information of Glyur000347s00029048.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05150.1	0	Calcium-binding tetratricopeptide family protein
NR	XP_003590173.1	0	TPR repeat-containing protein, putative [Medicago truncatula]
COG	YP_001864361.1	2.00E-26	hypothetical protein Npun_R0666 [Nostoc punctiforme PCC 73102]
Swissprot	tr\|O23052\|Y1515_ARATH	0	Uncharacterized TPR repeat-containing protein At1g05150
trEMBL	tr\|G7I6P0\|G7I6P0_MEDTR	0	Calcium-binding EF hand protein {ECO:0000313\|EMBL:AES60424.2}

Sequence

Transcript Sequence

>Glyur000347s00029048.1
ATGGCGACGAGAGGCAGCAGATCGGAGAAGGTGCGTCGAATCTTCGTCCAATTCGACGCGAACCGCGACGGTGGTCTCAACCGTGATGAGATGGCGTCGCTGGTTGGTGCGGTGAACCCTAGGGTGAAGTTCAGCGACGAGCAAATCAACGCCATTCTCGACGAGGTTTTCAGAACCTACGGCGAGTTCATCGACGGCGATAGGGGACTCACATACGATGGCCTCCTCCGTACCTACGACGACGGCGCCGGCGACGTTGATAGGGACTTCGACGCCCTCGGGCTCGACCTCAACCCCGACGATTCCGGCAAGGCCCCGGCACCGGCGTCGGAGGCCTCGTCGTCGTCGATCGTCGACGAGAGGATGGTGGTGGAGTCGCAGAAGAAGCAACGCACGGCGGCGTGGGCGGTGTCGCCAAACCACGGCATCGTGTTTGACGACACGTGGAAGATCGTCGACGACTTGGAGATTCTCATCAAGAGGCTGAAGGTGAAGCAAGCAAAAGATGGTGGGAAGGTGAAAGGTGAGAACTTTGATGCCTATTCTGATGCGGGTTGGTCACGTGAGTTGGGTCCTTCCACTGAGATTTCGGAGAAGAGGGTGTTTTGGGAGGAATCAGGGCATGATTATGCTGTTTTTGTGAAGGAATTAGGGGGTTTGAGAACTAGGGCTGATAGTGCTAGATCAAGGGAAGAAGCCTTTGATGGGCACATGGCAATTGGTAGGGTTTTATATGAGCATCAATTGTTTAAGGAGGCTTTGGTTAGTTTCAAGAGGGCTTGTGAGTTGCAGCCTGTTGATGTGAGGCCTCATTTTAGAGCCGGTAACTGTTTTTATGTGCTTGGAAGGCATAAGGAGGCCAAGGAAGAGTTTTTGTTGGCACTTGAATCTGCTGAGGCTGGTGGAAACCAATGGGCTTATTTGCTGCCACAGATTTATGTCAACCTTGGCATTGCATTGGAAGGTGAAGGTATGGTTTTGAGTGCCTGTGAGTATTATAGGGAGGCTGCGATTCTTTGTCCCACACATTTTAGAGCTTTGAAGCTCTTGGGTAGTGCTCTTTTCGGCGTAGGGGAGTATAGGGCCGCTGTGAAGGCCCTTGAGGAGGCTATTTTCATGAAGCCGGATTATGCCGATGCNCATTGCGACCTGGCTTCCGCATTGCATGCCATGGGCGAGGATGAGAGGGCGATTGAGGTGTTTCAGAAGGCTATTGATTTGAAGCCGGGTCATGTCGATGCGCTTTATAATTTGGGTGGGTTGTATATGGACCTGGGAAGGTTCCAGAGGGCTTCTGAGATGTATACCAGGGTCTTGGCTGTGTGGCCTAACCATTGGCGGGCGCAGCTGAACAAGGCGGTGTCGTTGCTGGGAGCTGGGGAGACCGAAGAAGCCAAGAGAGCTCTGAAGGAAGCATTGAAAATGACAAATAGGGTTGAGTTGCATGATGCGATATCGCATTTGAAGCAGCTCCAGAAAAAGAAGACCACCAAAGCTAATGGGGCTATTCCTGGGGAGTCGGCATTTGTTATAGTCGAACCATCCAAGTTTAAGACAGTTGGAGAAAAGACTACTGTGAGGCAGGAACTGGCCAGCGCTCTGCAAATCAGAGCACTCCAGAGGGTCAGTAGGCTGAGCCGTTGTAGTGTGGAGCTTTTGAAGAAGGAAATGAGTGAACACGATGTGCCAGTGTCCTATTCTGGTAGTGGAATGCCTGAAAAATCCATCCGGAAGCCNAACCTGGAAGTAATTCTTCGCAGATTACTTAGTTTTCTGAAGCCTGAGACTTTCCAAGGAGCCGTGAAAGCCATAAATGAGAGGATTCTTTCTGTTCTGGATGAAACTGGTTCAGGCAGGCTAGACCTGGGAATGTTTTATGCAGTTCTTGCTCCTATTTGTGGTGGTCCTCCAGAGAGACGCAAAAGGATTGCCTTCGATGCGCTCTTATGGCGTCCCATGAATGAAGACGGTGCCAACTTAAAGAAAGTTGATGCCTCTGTATACATCAAGTTGTTAAGGGCTATTTATGTTCCTTCCCAAGGGGNTAGTGAATTAATGGAGGTTCGCGGAGACTCAGACACTTCAATGGTTTCCTTCTCCGAGTTCCTAGTCATGTTCGATGATCCAGATTGGGGTTTTGGGATTATGTCCACTTTAGTGAAGCTTGAAGCCGGGGATAGAAACCGGCACGGTAACACCGTGTGCTCGGTTTGCCGCTATCCCATTATTGGTTCCCGCTTCAAGGAGATAAAATCTCATTTTAGTTTGTGTAACCAATGCTACAGTGAGGGAAAGGTGCCTTCCACGTTTAAGCAGGAAGAGTACAGATTTAAGGAGTATGGAAGTGAGGGTGAAGCCATGAAAGATAAGTGTATGTGCTTTAATTTGCAATCCCGTAATGAACAGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00347	143900	146308	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GTnc

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005509 calcium ion binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000347s00029048.1	PF13414.1	TPR_11	239	296	1.50E-06
Glyur000347s00029048.1	PF07719.12	TPR_2	311	343	0.024
Glyur000347s00029048.1	PF13414.1	TPR_11	346	409	6.70E-13
Glyur000347s00029048.1	PF13414.1	TPR_11	414	474	6.30E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.831
SRR1783600	control	22.268
SRR1783602	moderate drought stress	17.201
SRR1811619	moderate drought stress	20.081

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.859
DRR006520	Root Summer glycyrrhizin high producing strain	27.262
DRR006521	Root Winter glycyrrhizin high producing strain	6.724
DRR006522	Root Winter glycyrrhizin high producing strain	6.376
DRR006523	Root Summer glycyrrhizin low producing strain	40.936
DRR006524	Root Summer glycyrrhizin low producing strain	40.619
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.094
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.052

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.712
SRR2868004	Drought Stress (root)	37.482
SRR2967015	Control (root)	41.029

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.462
SRR9715740	Leaf	23.728
SRR9715741	Leaf	28.117
SRR9715739	Root	44.152
SRR9715742	Root	37.323
SRR9715743	Root	41.163

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.897
SRR8749028	MeJA induced 9h	16.352
SRR8749029	MeJA induced 9h	9.551
SRR8749030	Uninduced	11.724
SRR8749031	Uninduced	13.015
SRR8749032	Uninduced	10.743

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.289
SRR8400027	Control - Root	35.823