Gene detail

Gene detail information of Glyur000347s00029044

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G60000.1	5.00E-73	RNA-binding (RRM/RBD/RNP motifs) family protein
NR	AFK38283.1	5.35E-136	unknown [Lotus japonicus]
COG	YP_003278668.1	1.00E-17	RNA-binding region RNP-1 [Comamonas testosteroni CNB-2]
Swissprot	tr\|P19684\|ROC5_NICSY	1.00E-45	33 kDa ribonucleoprotein, chloroplastic (Precursor)
trEMBL	tr\|I3SDE1\|I3SDE1_LOTJA	2.00E-136	Uncharacterized protein {ECO:0000313\|EMBL:AFK38283.1}

Sequence

Transcript Sequence

>Glyur000347s00029044.1
CAAGAAACTCATCTTATCTTGACATATCTATAACCTGTTCCTATATCACTGGACAGTGGACACAATCTGGCCACCTCATCAATAACCACCACACAACACGACCCACTCTCTCTCTCTCATCGCATCTTCTCACTTGTTAAAAGTTTCCAACTTGTTGTAGCCCTTTCAGTTTCCACCAAAACCACCACCACCACAACCACAACAACATGGCTGCCACAGCTGCTACAGGCATAGCCTCCTTATTTTCTTCTTCCATCAACAACACTGTCAAATGTTGTCTCCGTTCCAAGAACAACTGCTTTATGTTGGCATCAGCTGTGTCACACTCATTGGAACCTCTGTCTATTGGCACCACCATCTCTGCACACAAGTTGTGGGTGCCTAGAATTTCTGCTGCTGTTGCACAGGAAGAGGTGGTTGTAGTGGCTAATGATGANGGGGTTGAAGAGGAGAATGTGAATGAGGAGGAAGTGGTAGCAGCAGCAGAAGAAGAAGAAGAAGACACTGTCACTGATTCCTCTGTCAGGAGCACTAAGCTTTATTTTGGGAATTTGCCCTACAGTGTTGATAGTGCTCAACTTGCTGGGTTGATTGAGGAATATGGAAGCGCAGAACTAATTGAGGTTCTTTACGACAGGGACACTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGACTTGTATTGAAGATTGTCATGCAGTTATAGAAAACCTTGATGGAAAAGAGTTCATGGGCAGAACCCTGAGGGTGAACTTCTCTGACAAACCAAAACCAAAAGAACCATTGTACCCTGAAACTGAATACAAGCTCTTTGTTGGGAACCTGTCTTGGACAGTGACTTCTGAGAGTCTAGCAGAAGCCTTTCAAGATTATGGAACTGTGGTTGGAGCTAGGGTGTTATATGATGGGGAAACCGGAAGGTCACGGGGCTATGGCTTTGTTTGCTATTCAAAGAAATCAGAAATGGAAGCTGCCCTTTCATACTTGAATAATGTGGAACTAGAAGGNCGACCGATGCGTGTAAGCTTGGCCGAAGGGAAACGTTCACGTTAATAGAAACTTGGAAAGGCTCTGAGATGTTCACCAATGGTGCCAAAGAAATGAGAAGGGGATGCTTGTATACCTGCCATGATGCACTTGCTTGATCATTTTGCTGTGGAATTAATTCCCTTTTTTCCATTCTTGTGGTGTATAAATTATTTCCTCTCACTTTCAAAAGATTTGCTGACCCATAATTCTGTTTTATTTTGGGTTAATTTTTTTAGCTGATACTAACATTGGCTATGTATTGCTTCCTTCTTGTGCTCACTGAAAATCATACATTGAATCACATGTTCTACTCATATGTAACATTTGCTATGAAAATGTTACATCAAGCACCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00347	102992	106018	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000347s00029044.1	PF00076.17	RRM_1	111	181	2.60E-16
Glyur000347s00029044.1	PF00076.17	RRM_1	202	271	1.80E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.421
SRR1783600	control	0.447
SRR1783602	moderate drought stress	0.844
SRR1811619	moderate drought stress	0.818

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.860
DRR006520	Root Summer glycyrrhizin high producing strain	0.930
DRR006521	Root Winter glycyrrhizin high producing strain	0.159
DRR006522	Root Winter glycyrrhizin high producing strain	0.156
DRR006523	Root Summer glycyrrhizin low producing strain	0.637
DRR006524	Root Summer glycyrrhizin low producing strain	0.628
DRR006525	Leaf Summer glycyrrhizin high producing strain	178.043
DRR006526	Leaf Summer glycyrrhizin high producing strain	176.699

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.367
SRR2868004	Drought Stress (root)	13.499
SRR2967015	Control (root)	9.520

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	145.894
SRR9715740	Leaf	232.445
SRR9715741	Leaf	108.927
SRR9715739	Root	2.935
SRR9715742	Root	1.553
SRR9715743	Root	2.497

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.154
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.022
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.266

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.109
SRR8400027	Control - Root	8.235