Gene detail

Gene detail information of Glyur000347s00029040

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G13510.1	0	ammonium transporter 1;1
NR	AAG24944.1	0	putative ammonium transporter AMT1;1 [Lotus japonicus]
COG	YP_002463744.1	3.00E-91	ammonium transporter [Chloroflexus aggregans DSM 9485]
Swissprot	tr\|P54144\|AMT11_ARATH	0	Ammonium transporter 1 member 1
trEMBL	tr\|Q9FVI4\|Q9FVI4_LOTJA	0	Putative ammonium transporter AMT1;1 {ECO:0000313\|EMBL:AAG24944.1}

Sequence

Transcript Sequence

>Glyur000347s00029040.1
AAACAAAATGACAGATGACAAACTTTGAAAAGTCTTCTCCTACTCCAAAAGCAAACTCTGAAAAAACCTTGACACTTCCCCAGTTCCCACTTTCCACTCTCCTTCTCTATATATATNACCGTACCATCCTTCACCTTTGGTCCACAAAACGCACTCAAATCCTTCGTAGCACCTTCCTTCGCTTCAAAAACCCTTAACCCACTCACCATGTCGCTGCCGGANTGCTCGGCGGCGCAACTGGCGCAACTAATCGGCCCCAACGCAACGGACGCCGGAGCCGCCGCAGCCTTCATCTGCAACCAATTCACCGCGGTGNATAACAAATTTTCCGACACAGCCTTCGCCATAGACAACACATACCTCCTCTTCTCCGCCTACCTCGTCTTCTCGATGCAACTAGGCTTCGCGATGCTCTGCGCCGGTTCCGTACGGGCGAAGAACACGATGAACATCATGCTCACCAACGTCCTCGACGCCGCCGCCGGTGGCCTCTTCTACTACCTCTTCGGTTTCGCCTTTGCCTTCGGAACACCCTCCAACGGCTTCATCGGAAAACACTTCTTCGGACTCAAGGACGTTCCCACCGTTAACTTCGATTACAGTTACTTCCTCTACCAGTGGGCTTTCGCCATCGCCGCAGCGGGAATCACGAGTGGTTCCATCGCTGAGCGCACGCAGTTCGTCGCGTACCTGATCTATTCTTCTTTTCTNACCGGATTCGTTTACCCTGTTGTTTCTCACTGGTTTTGGTCCGGTGATGGTTGGGCCTCTGCTACCAACACAGGGGATTTGCTTTTTGGTACCGGCGTTATTGATTTCGCCGGCTCCGGCGTTGTTCACATGGTCGGCGGCGTTGCTGGTCTTTGGGGAGCGCTTATTGAAGGACCCAGGATTGGACGGTTCGATCACACTGGTCGTGCCATCGCGCTTCGCGGTCATAGCGCTTCACTTGTTGTTCTTGGAACCTTCATGCTTTGGTTCGGTTGGTACGGTTTCAACCCNGGCTCCTTNACCAAAATTCTCAGTGCTTACGATTCAGGTAACTATTACGGGCAATGGAGTGCGGTGGGTAGGACTGCAGTGACGACGACGNTGGCGGGATGTACGGCGGCGCTGACAACACTTTTCGGGAAGAGGATTCTCTCCGGTCACTGGAACGTAACCGACGTGTGCAACGGTTTGCTGGGCGGCTTCGCGGCGATAACCGCCGGGTGTTCCGTCGTGGAGCCGTGGGCGGCGATCGTGTGTGGCTTCGTCGCCGCTCTGGTGTTGATCGCGTGCAACAGACTCGCGGAGAGGGCGCGTTTCGACGACCCGTTGGAGGCAGCACAGCTTCACGGGGGTTGCGGCGCGTGGGGCGTGATATTCACCGCGTTGTTCGCNAAGGAAGAGTACGTGAACCAGGTTTACCCGGGAAAACCGGGTCGACCTTACGGGTTGTTCATGGGCGGTGGTGGGAAGCTTCTAGGGGCGCACGTGATCCAGGTCCTGGTTATTGCCGGGTGGGTCAGNGCAACCATGGGTCCTCTCTTTTACGTTCTCAATAAGATGAAGCTGCTTCGGATCTCTACCGANGATGAACTTGCGGGTATGGATCTGACCCGACACGGTGGATTTGCTTATGCTCTCGAGGATGAGTCGCATAAACACGGGATTCAGTTGAGGAAGATTGAACCCAACTCTTCCACTCCCACCAGTACCACAGATTCATGATAATAATTTAATTAATTTTGTATTTTTTTTCTTTGTACGGACGTTGTAATTTTTATTGGTCGTACATCATGGTGGGCTATAAAAGATAAGATCTTATAAAAGATACTCCCTCTGGTCTCAAATATAAAAAAAAAATACATATATCTGAATTATATATGATTCAGATACATGTATTTTTTTTTTATATTTGAGACCGAAGGAAATATCAGGGACGTTTGGGTGGGTTGTTGTTGGCTAATAGCACGTTGGGAATTCAAGTGGCAGTAAAAGTATTTGATTTTTGAAAATTATTTTCGGTACTCCTTGTGANTTTTTTTTTTGAAATTCAAATGGTGACGTGTGCAATTACTCCAACCTGGTCAGTCAATTAAGGGTAAAGTGTTTCCTTGCATTGCCACTCTATTCTTAAGTATTGAATACTTAATCACTTGGTTCAAGGATGAGGTACCGAACCGCCACGCTAGTGAACGTTGAGTTACTCCNTGCAAATTTTACTGTGTGAAGTTTGTAATATTTTTTTTAGTTTTTATGGAGATTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00347	66839	69959	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0015696 ammonium transport

GO:0072488 ammonium transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0008519 ammonium transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000347s00029040.1	PF00909.16	Ammonium_transp	51	472	3.40E-135

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.728
SRR1783600	control	15.730
SRR1783602	moderate drought stress	14.553
SRR1811619	moderate drought stress	14.618

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.389
DRR006520	Root Summer glycyrrhizin high producing strain	30.217
DRR006521	Root Winter glycyrrhizin high producing strain	4.379
DRR006522	Root Winter glycyrrhizin high producing strain	4.197
DRR006523	Root Summer glycyrrhizin low producing strain	96.023
DRR006524	Root Summer glycyrrhizin low producing strain	95.674
DRR006525	Leaf Summer glycyrrhizin high producing strain	222.859
DRR006526	Leaf Summer glycyrrhizin high producing strain	221.393

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	142.831
SRR2868004	Drought Stress (root)	247.160
SRR2967015	Control (root)	188.389

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	239.499
SRR9715740	Leaf	314.437
SRR9715741	Leaf	275.890
SRR9715739	Root	132.143
SRR9715742	Root	108.947
SRR9715743	Root	107.025

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.391
SRR8749028	MeJA induced 9h	22.368
SRR8749029	MeJA induced 9h	15.111
SRR8749030	Uninduced	51.909
SRR8749031	Uninduced	39.954
SRR8749032	Uninduced	33.649

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	106.565
SRR8400027	Control - Root	110.155