Gene detail information of Glyur000346s00018192 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G45320.1 | 2.00E-47 | |
| NR | XP_004509497.1 | 5.78E-114 | PREDICTED: uncharacterized protein LOC101507548 [Cicer arietinum] |
| trEMBL | tr|G7L766|G7L766_MEDTR | 4.00E-113 | Late embryogenesis abundant protein {ECO:0000313|EMBL:AET03483.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00346 | 155802 | 156431 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000346s00018192.1 | PF03168.8 | LEA_2 | 87 | 188 | 1.30E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.533 |
| SRR1783600 | control | 8.461 |
| SRR1783602 | moderate drought stress | 4.406 |
| SRR1811619 | moderate drought stress | 4.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.983 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.232 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.705 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.764 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.794 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.550 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.673 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.102 |
| SRR2868004 | Drought Stress (root) | 3.226 |
| SRR2967015 | Control (root) | 2.608 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.856 |
| SRR9715740 | Leaf | 1.024 |
| SRR9715741 | Leaf | 0.472 |
| SRR9715739 | Root | 2.935 |
| SRR9715742 | Root | 4.961 |
| SRR9715743 | Root | 3.311 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.059 |
| SRR8749029 | MeJA induced 9h | 0.193 |
| SRR8749030 | Uninduced | 0.303 |
| SRR8749031 | Uninduced | 0.266 |
| SRR8749032 | Uninduced | 0.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.009 |
| SRR8400027 | Control - Root | 2.363 |