Gene detail

Gene detail information of Glyur000346s00018191

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G31650.1	1.00E-153	RHO guanyl-nucleotide exchange factor 14
NR	XP_003547820.1	0	PREDICTED: rop guanine nucleotide exchange factor 14-like isoform X1 [Glycine max]
Swissprot	tr\|Q56WM6\|ROGFE_ARATH	0	Rop guanine nucleotide exchange factor 14
trEMBL	tr\|K7MGA4\|K7MGA4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G17090.3}

Sequence

Transcript Sequence

>Glyur000346s00018191.1
ATTGTGACATATGATGGCCTTGAGAGTTGCAATATTCTTGATAATCAATATTACGAAGATGAAAGCAGAACTAGTAGAGGAGATGGGTGTATAACTGATTCATTTAATGATGATGACTCCAGCTGTTGTTCATCCAGTAAAGATGCTTTTGGATCATTCTCTTCAAAATGTTTGCCAATGAAAAGAGATGGACAAGGATTGGAAGAATGGGAACTCTCAGAAAGTCCTCAACATCTTTATGTTAAAGAAAAACCTGTTTATGCCATCCAATATTCAGATGTAGAAGACATGAAAGAGAAGTTTGCAAAGCTGTTGCTAGGTGATGATATTACAGGAGGAACTAAGGGCTCTAATACCGCTTTAACACTGTCTAATGCCATCACAAACCTAGCAGTGACGGTTTTTGGTGAGTTGTGGAAATTGGAACCACTGTCTGAAGAAAAGAAGAAGAAATGGCGAAGAGAAATGGACTGGTTGCTGTCTCCTACCAACTATATGGTTGAGTTAGTTCCTGCTAAGCAAAACGGTGCCAATGGTGGGATCTTCGAGATAATGACCCCAAAAGCTCGTGCAGACATCTGCATGAATCTTCCAGCACTTCAGAAGTTGGACTCTATGCTTATTGAGACACTGGACTCAATGGTGCATACTGAGTTTTGGTATGCAGAGGGAGGAAGCCGGGCAGAAGGGAGGAACACAGCAGGTGGAAGACAAAGCAAAAGATGGTGGCTTCCATNACCTCAAGTACCAAAAACTGGGATTTCTGACACTGAAAGGAAGAGGCTACTTCATCAGGGTAGGGTGGTACATCAAGTATTCAAGGCTGCCAAATCTATCAATGATAATATGTTGCTTGAAATGCCCNTGCCATCAACAATTAAGGACGCGCTTCTGAAGGCAAGCCTTGGAGAGGAACTGCACAAAGTTTTGATGGCTGAATCAAGTTCTGGAGAAGAAATGCTTAAATCTCTCAATTTGAAATCTGAACACAGTGCCCTAGAGACCATTAATAGATTAGAAGCTGCAACATTGTCATGGAAAGAGAGAATTGTGCCAGAACATAATGGCAAATCCCCAGTTCGAACCCCATGGTATTTCATGAAGGACCCTATGTCAGGTATGGATAAGACGGAAATATTGTTGGACCGTGCAGAAACACTTATAAAGCTGCTTAAAACCAGATACCCACACCTTCCTCAAACATTTCTGGATGCTACCAAAGTTCAATATGGCAAGGACATTGGGCACTCCATCTTGGAGGCATATTCAAGAGTGCTTGGAAATTTAGCCTTCAGCATACTGTCTAGAATAGGAGATATATTGCAGGAAGATGCTTTAAGCAATCCCAATTCACCTATGGCAACAGGTTGCTCTCCTGCAGGGATAAATCTTTCTGATGCTTGGGTAATTGGTNCACATATCAGACACTCATTAATTGATAAGATGAACAAAGCAAATGTAATACAGCATTGTGATTCCAGCTGTGACAGTACTTCTGATATAGAACTCTCATCTAATGAAGCCACATCCAGCAGCTCTGTAACTGACACACCAAGCCATAGTCGAGTCTGGTGCATTGGTAAAGAGGCTTGTAAAAGTGTGTCTCCTCAAAATTCTCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00346	143925	146406	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005089 Rho guanyl-nucleotide exchange factor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000346s00018191.1	PF03759.8	PRONE	91	449	6.00E-139

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.214
SRR1783600	control	1.184
SRR1783602	moderate drought stress	1.210
SRR1811619	moderate drought stress	1.258

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.467
DRR006520	Root Summer glycyrrhizin high producing strain	1.570
DRR006521	Root Winter glycyrrhizin high producing strain	0.888
DRR006522	Root Winter glycyrrhizin high producing strain	0.873
DRR006523	Root Summer glycyrrhizin low producing strain	0.408
DRR006524	Root Summer glycyrrhizin low producing strain	0.396
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.623
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.633

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.395
SRR2868004	Drought Stress (root)	1.890
SRR2967015	Control (root)	1.424

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.083
SRR9715740	Leaf	0.701
SRR9715741	Leaf	0.641
SRR9715739	Root	0.198
SRR9715742	Root	0.340
SRR9715743	Root	0.195

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.667
SRR8749028	MeJA induced 9h	4.712
SRR8749029	MeJA induced 9h	3.210
SRR8749030	Uninduced	8.534
SRR8749031	Uninduced	6.115
SRR8749032	Uninduced	3.049

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.668
SRR8400027	Control - Root	0.986