Gene detail information of Glyur000346s00018186 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G19440.2 | 1.00E-151 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004509525.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q940A6|PP325_ARATH | 0 | Pentatricopeptide repeat-containing protein At4g19440, chloroplastic (Precursor) |
| trEMBL | tr|G7L752|G7L752_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:AET03469.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00346 | 101516 | 104336 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000346s00018186.1 | PF12854.2 | PPR_1 | 234 | 267 | 3.00E-11 |
| Glyur000346s00018186.1 | PF13041.1 | PPR_2 | 273 | 322 | 1.90E-17 |
| Glyur000346s00018186.1 | PF13041.1 | PPR_2 | 343 | 392 | 4.30E-17 |
| Glyur000346s00018186.1 | PF01535.15 | PPR | 454 | 480 | 0.0083 |
| Glyur000346s00018186.1 | PF01535.15 | PPR | 486 | 516 | 1.00E-06 |
| Glyur000346s00018186.1 | PF13041.1 | PPR_2 | 520 | 566 | 1.30E-16 |
| Glyur000346s00018186.1 | PF12854.2 | PPR_1 | 585 | 615 | 7.30E-09 |
| Glyur000346s00018186.1 | PF12854.2 | PPR_1 | 622 | 652 | 4.00E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.198 |
| SRR1783600 | control | 2.295 |
| SRR1783602 | moderate drought stress | 4.781 |
| SRR1811619 | moderate drought stress | 4.670 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.892 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.825 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.107 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.126 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.819 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.961 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.854 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.688 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.029 |
| SRR2868004 | Drought Stress (root) | 6.407 |
| SRR2967015 | Control (root) | 4.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.551 |
| SRR9715740 | Leaf | 2.672 |
| SRR9715741 | Leaf | 2.914 |
| SRR9715739 | Root | 0.281 |
| SRR9715742 | Root | 2.505 |
| SRR9715743 | Root | 1.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.357 |
| SRR8749028 | MeJA induced 9h | 4.811 |
| SRR8749029 | MeJA induced 9h | 1.764 |
| SRR8749030 | Uninduced | 1.191 |
| SRR8749031 | Uninduced | 1.632 |
| SRR8749032 | Uninduced | 1.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.145 |
| SRR8400027 | Control - Root | 6.706 |