Gene detail

Gene detail information of Glyur000346s00018177

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G49010.3	9.00E-98	breast basic conserved 1
NR	XP_004509537.1	2.83E-141	PREDICTED: 60S ribosomal protein L13-1-like [Cicer arietinum]
Swissprot	tr\|P41128\|RL131_BRANA	2.00E-129	60S ribosomal protein L13-1
trEMBL	tr\|G7KWF6\|G7KWF6_MEDTR	7.00E-141	60S ribosomal protein L13 {ECO:0000256\|RuleBase:RU000572}

Sequence

Transcript Sequence

>Glyur000346s00018177.1
CAAAAAAGAAAACCTAAAACGGGCTGGGTTGGGCCGTTTTGANGAGAAGTGCTGTTAAAAACCTAGCTGCATTGACACTCCCTCGCTTTCTGCTGCTGCAACAAGCTCCTTCGGCGTGTGAAGAAGAAGAACAACCCTCAGCTCAGGTAAGCCATGGTCAAGCATAATAATGTGATCCCTAATGGGCACTTCCGGAAGCATTGGCAAAACTATGTGAAGACTTGGTTCAATCAACCAGCTCGGAAGACAAGAAGACGGTTAGCTCGGCAGAAGAAGGCTGTTAAGATTTTTCCTAAGCCTACAGCNGGACCACTTAGACCTGTTGTTCATGGTCAGACTTTGAAATACAACATGAAACTCAGAGCTGGGAAAGGGTTTTCTCTTGAAGAACTTAAGGCTGCTGGTATTCCCAAAAAGCTTGCTCCAACTATTGGCATTGCTGTTGATCATCGCCGTAGGAACCGTTCGTTGGAAGGTCTGCAAGCTAATGTGCAGAGGTTGAAAACATACAAGGCCAAGTTGGTTGTGTTCCCAAGACGGGCTCGCAAGGTCAAGGCCGGAGATTCTAGTCCTGAGGAACGTGCAAATGCCACACAAGTTCAGGGTCCATACTTGCCCATTGTGAGGGAGAAGCCATCTGTGGAGCTTGTTAAGGTTACAGATGAAATGAAGGCATTCAAGGCGTATTATAAGCTTCGTCTTGAACGCACAAACAAACGCCATTTTGGTGCCAGACTAAAGAGAGCTGCTGAAGCAGAAAAGGAAGACAAGAAATAGTGACTTTTAGAAGCCCGTTTGTAATCCATATAATAGGTGTTGCAAGACAATTTTGTTTGACATTCTTAACTCATGGCTTTATAGAGAGCATGCTTTAGTAACATCACCTTCTTGAGTATTGTTTGAAATCACGTCTGTTGATTGAAGCACTCTCCTTTGTTTTAATTATTTCGTTGTTTATGGCTTTATAGATATATATATATATTGTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00346	69244	71770	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000346s00018177.1	PF01294.13	Ribosomal_L13e	6	184	3.20E-92

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.001
SRR1783600	control	18.925
SRR1783602	moderate drought stress	22.461
SRR1811619	moderate drought stress	22.468

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	75.995
DRR006520	Root Summer glycyrrhizin high producing strain	74.715
DRR006521	Root Winter glycyrrhizin high producing strain	33.114
DRR006522	Root Winter glycyrrhizin high producing strain	32.352
DRR006523	Root Summer glycyrrhizin low producing strain	59.451
DRR006524	Root Summer glycyrrhizin low producing strain	59.878
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.758
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.705

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	99.606
SRR2868004	Drought Stress (root)	63.120
SRR2967015	Control (root)	63.823

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.022
SRR9715740	Leaf	17.988
SRR9715741	Leaf	17.147
SRR9715739	Root	50.283
SRR9715742	Root	37.334
SRR9715743	Root	43.835

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	144.259
SRR8749028	MeJA induced 9h	67.115
SRR8749029	MeJA induced 9h	93.178
SRR8749030	Uninduced	11.439
SRR8749031	Uninduced	5.242
SRR8749032	Uninduced	12.300

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	74.314
SRR8400027	Control - Root	65.959