Gene detail information of Glyur000346s00018176 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G43040.1 | 0 | tetratricopeptide repeat (TPR)-containing protein |
| NR | XP_004509538.1 | 0 | PREDICTED: tetratricopeptide repeat protein 7B-like [Cicer arietinum] |
| trEMBL | tr|I1MMJ3|I1MMJ3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G17470.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00346 | 61828 | 66496 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000346s00018176.1 | PF13374.1 | TPR_10 | 306 | 334 | 0.43 |
| Glyur000346s00018176.1 | PF07719.12 | TPR_2 | 549 | 577 | 0.018 |
| Glyur000346s00018176.1 | PF07719.12 | TPR_2 | 692 | 720 | 0.024 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.780 |
| SRR1783600 | control | 1.747 |
| SRR1783602 | moderate drought stress | 1.314 |
| SRR1811619 | moderate drought stress | 1.202 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.781 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.738 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.538 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.496 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.510 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.611 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.857 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.469 |
| SRR2868004 | Drought Stress (root) | 10.807 |
| SRR2967015 | Control (root) | 10.960 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.967 |
| SRR9715740 | Leaf | 1.021 |
| SRR9715741 | Leaf | 1.013 |
| SRR9715739 | Root | 1.052 |
| SRR9715742 | Root | 3.255 |
| SRR9715743 | Root | 2.623 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.087 |
| SRR8749028 | MeJA induced 9h | 7.277 |
| SRR8749029 | MeJA induced 9h | 3.898 |
| SRR8749030 | Uninduced | 5.378 |
| SRR8749031 | Uninduced | 6.725 |
| SRR8749032 | Uninduced | 5.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.410 |
| SRR8400027 | Control - Root | 9.594 |