Gene detail

Gene detail information of Glyur000346s00018173

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G19120.2	0	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	XP_004509540.1	0	PREDICTED: probable methyltransferase PMT21-like [Cicer arietinum]
COG	YP_001275145.1	4.00E-09	group 1 glycosyl transferase [Roseiflexus sp. RS-1]
Swissprot	tr\|Q9C6S7\|PMTK_ARATH	0	Probable methyltransferase PMT20
trEMBL	tr\|A0A072TT23\|A0A072TT23_MEDTR	0	Methyltransferase PMT16, putative {ECO:0000313\|EMBL:KEH20321.1}

Sequence

Transcript Sequence

>Glyur000346s00018173.1
AAAAGAAAGAAGAAATGTTTAACGCAAAAACAGGGGCAGCAGCTACGCAACGCGTACGAGGGTTGAGTTGAGCTACTAGTTAAAGAGAAAGTCTTTGAGCCAGCCTGAGGTATCTGACTAACTCATTGCATGAATGGACTCTTTTTGTTCTTAGTTTCCCTTTTCCCCTGTTCCTCTTCTCTCTCTCATTCTGCAATCAAACAAACATTGTTCCTGTTTCAGTCACTGCATTTTAACCACTCTCCATTCTATCAAAACACACAAGCGGTGGCAGAGACAGAAACAAACAGAGACAGAGGAGAGAAACAGAGAACGGTGAAATAGTTGATTATTTCACGGACCATGAAGAATAACGAAGGAAAACTGTTAGACAAGAGCAGGATTGTCCCCATAGCAATCATATTTGTGGTGCTANGTGGACTTTCTTTCTATATGGGTGTAATTTTTGGTTCTGAGAAGGACAGATTTGTACCATTTATCAGCCAGAAATCCCTTGAATCCCCCAAGGAATCATCAATAAGTTCTCTGCAAATTAAAAACATCAGTTTTCCCGAATGCGGTATTGACTATCAAGATTATACTCCATGCACAGATCCAAGGAGATGGAAGAAGTATGGATCATATCGACTTAATTTGTTGGAACGCCATTGCCCTCCAGTTTTTGAGAGGAAAGAGTGCTTAGTTCCTCCCCCGGATGGGTACAAGCCTCCAATTAGATGGCCAAAGAGCAGAGATGAATGTTGGTACAGGAATGTTCCATATGACTGGATTAACAAGCAGAAGTCTAATCAACATTGGTTGAAAAAGGAAGGGGAGAAATTTTTCTTTCCAGGTGGGGGTACTATGTTCCCTAANGGTGTTGGTAAATATGTTGATTTGATGCAAGATCTGATCCCAGAAATGAAAGATGGGACTATTCGAACTGCCATTGATACTGGTTGTGGGGTTGCTAGNTGGGGTGGTGACTTGTTAGATCGTGGGATTCTGACTCTTTCTCTTGCTCCAAGAGACAACCATGAAGCTCAGGTTCAATTTGCTCTGGAGCGTGGTATTCCTGCAGTTCTTGGTGTCCTTGCTACACATAGACTTCCATTCCCATCAAACTCCTTTGATATGGCTCATTGCTCCAGATGCCTCATCCCATGGACAGAATTTGGTGGAGTTTATCTCCTTGAAGTACACCGGATTATTCGTCCTGGAGGATTTTGGGTCTTGTCTGGTCCACCGATCAACTATGAGCGCAGGTGGCGTGGATGGAACACAACGATCAAAGAGCAAAGGTCAAATTANGAGAAGTTGCAGGAATTGCTGACTTCATTGTGCTTCAAAATGTATAATAAAAAGGGTGACATTGCTGTATGGCAGAAGTCTCCAGATAATGATTGCTATAATAAGCTGTCTAGAGATACCTATCCACCTAAATGTGATGACAGCCTTGCACCAGATTCAGCATGGTATACNCCAATCCGTACTTGTATTGTTGTTCCGGATCAAAAGTTTAAGAAATCAGGTCTGGCATCAATTTCTAAGTGGCCTGAGCGGTTGCATGTTNCACCTGAACGGATTTCAATGGTTTATCATGGGAGTGCTGGTACTTTCAAACANGATGACAGTAAGTGGAAAAAGCATGTCGAGCACTACAAGAAGTTGATCCCTGAGCTTGGGACCGACAAGATAAGAAATGTGATGGACATGAATACAGCATATGGAGGATTTGCTGCGGCCTTGATTGATGATCCTGTATGGGTCATGAATGTTGTCTCATCTTATGCCGCCAACTCTCTCCCTGTGGTTTATGACCGAGGCCTCATTGGAACCTACCATGACTGGTGTGAAGCTTTTTCAACATATCCTCGGACGTATGACCTCCTCCATCTTGCTGGACTCTTCACTGCAGAAAGCCACAGATGTGAAATGAAGTACGTGTTGCTGGAAATGGACCGAATTTTGCGACCTGATGGGCGTGCTATCATTCGCGAGTCCAGTTACTTTATGGATGCCATTACAACCATTGCCAAGGGTATGCGATGGGAATGTCGTAAAGAAGACACCGAGCAGGGCGGTGACATGGAGAAGATATTAATATGCCAGAAAAAGCTATGGTACTCATCTAAGAAAGGTTCAAGATGACCGACCTAAGCAGTGGTGAGAAAAATGTGGTGGTTAGAATAGTAATGCCAGGAGTAGATTGATTCAATTTCTGTAACATATTCAGCCAAGAATCAGTCAAGTGTACACGTGCGTCAAAAGAACAGTTAGAAACCCAATAATCTGATTTNTTAATTTGTAGAGAAAGTTTTCATATACATATATAGAGAGAGATCGAGAGAGATTCTTGANTTAATATATGAGAAAAGTATGTCCTGGCCTCCTGGGATACGTGTNACTCTCGGGGCTGTAACACGTGTCACTACCCCTTGCTCTTTTTATTTCCAACCAAAGTTGTTTTTGTTTGTTGGTTTTTTTTTACTATTTTTATTAGGAAAAGATATGTACTGTGTATGGGCCAGGTTTATAAACTACTTATATGTNGAAAAAGATTGTTCAATATCAATTGAATGCAGGTGAAGGAGGGAAAGTATTAAACCCCACAGAAAGTGTGTGATTTCCCTTGAGTGCTGCCATTTCAAGAACAGNAATGTTTTTTAGGAATTGTTTTACTGAGTCAGCAATTGTATCGATGTTGAGCATGATACAGTAGTGTGCTGATCATTTGTGCCGAGTATCGTGTGTCAAAGATTGTTTTTATCATAAGTTGGTAAATGAAGTTCTCCTNGTGGATGGAATGAATGGTTAAAAACTGTTACTTTGATTATATTGTTGGAGGGATATAGTTCACTGTATTAGTTTGGGNATCAATAGTGGTAGACGATAATGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00346	41060	46516	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000346s00018173.1	PF03141.11	Methyltransf_29	78	584	1.70E-212

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.294
SRR1783600	control	10.363
SRR1783602	moderate drought stress	7.289
SRR1811619	moderate drought stress	7.322

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.002
DRR006520	Root Summer glycyrrhizin high producing strain	16.861
DRR006521	Root Winter glycyrrhizin high producing strain	35.875
DRR006522	Root Winter glycyrrhizin high producing strain	35.275
DRR006523	Root Summer glycyrrhizin low producing strain	27.270
DRR006524	Root Summer glycyrrhizin low producing strain	27.563
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.797
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.778

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.910
SRR2868004	Drought Stress (root)	17.529
SRR2967015	Control (root)	17.364

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.389
SRR9715740	Leaf	25.050
SRR9715741	Leaf	32.468
SRR9715739	Root	7.204
SRR9715742	Root	30.728
SRR9715743	Root	27.323

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	63.394
SRR8749028	MeJA induced 9h	96.714
SRR8749029	MeJA induced 9h	97.859
SRR8749030	Uninduced	79.452
SRR8749031	Uninduced	90.714
SRR8749032	Uninduced	119.853

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.444
SRR8400027	Control - Root	26.922