Gene detail

Gene detail information of Glyur000346s00018171

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G12080.3	7.00E-125	mechanosensitive channel of small conductance-like 10
NR	XP_004509542.1	0	PREDICTED: mechanosensitive ion channel protein 10-like [Cicer arietinum]
COG	YP_459771.1	2.00E-08	hypothetical protein ELI_14410 [Erythrobacter litoralis HTCC2594]
Swissprot	tr\|Q9LYG9\|MSL10_ARATH	1.00E-165	Mechanosensitive ion channel protein 10
trEMBL	tr\|K7MGC8\|K7MGC8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G17530.2}

Sequence

Transcript Sequence

>Glyur000346s00018171.1
ATGGAGAAAACGAGGTCCTCATCAGACCAAGTTGTTCTCACCTTCCTTGACCAACATAACCCTAAACCTAATTCCACCACCATGCATCACACCNCCACCGAAGCTCATGATGAGAAGCCCAAACACCACCCTTTGAGATCAGTCAAAACTCTCAACCGCCTCACCTTCTCCAAACCCAAATCCCGACTCCTAGAATACAACAACAAACTACCAACCTCCGGAGAAAGCGACAAGATCTCTCCCCTAAACAACGACGATGACGAAGATGACTCTGAATGGAACGAAGAGGAAGATGATGATGATGATGATGAAGAACAAGGTCAAAAGTTGCACCAAAAGAGAAAGTTTAGGTTGAAGTGGAGGCCTATAGTGGAGTGGGTATTGTTCCTNAACATACTAACATGCTTGGTGTGTTCCCTCATAATAACCTCCATAAAGAANATTCACATATTGGGCTTGGAGATTTGGAAGTGGTGCCTAATGGCAATGGTCACATTCAGTGGCCGTTTGTTCTCAGGGTGGTTAGTTGGTGTAACCGTCTTCATCCTAGAGAGGAACTTCATGTTAAGAGAGAAAGTCCTCTACTTCATCTACGGTCTAAGAAAGAGCATCAGGAATTGTCTCTGGCTGGGACTCGTGTTACTCTCCTACTGGAGCGTCGTCTTTGACGACGTCCAGAAGAAGAACCACAAGTTCCTTAACAAACTCTTTCAGGCACTTGTGGCAGTTCTAGTAGGCGCCATCATTTGGCTAGTGAAGATCGTGCTAGTGAAAATGCTAGCCTCTTCATTCCANGTGACGACCTACTTTGATAGAATGAAGGAGAGTGTTTTCCATCACTACATATTGGACACGTTGTCAGGTCCACCAATGGAAGATGCTGAACAACAACAAGAAGAGCACCACCACTTGAAGGGGTCTAAGTCCATGCCTTCTTCTGCAATGAGGTGGAAGAAGATATTGAAGGAGGATAGGACTAGGTTTGGGTCGAGGAGGAAGATTGACATGGAGAAGCTAAGGAAGCTGAGTGTGGAGGGCACGACTTCGGCGTGGAGCGTGAAGAGGCTTGTTAACTATGTGAGGTCTTCGGGGTTGTCCACCATTTCTAGGTCTGTGGATGATTTTGGGAATACTGAGTCTGAGATTAGTAGTGAGTATATTGAAGAGGAGGATCTCATGAGATTTTTGAAGAGGGTTGAGATACATACCATATTCCCACTCTTTGAAGGTGCTCTTGAAACTGGGAAGATTAGCAGGTCTTCATTTAGAAATTGGGTGATTCGAGCTTATTATGAACGAAAAGCTCTAGCACAGTCACTCAATGATACAAAAACAGCAGTGCAGCAGCTTCACAAATTAGCAAGCGCAGTTGTGAGTGTGATAATCATCATTGTGATGCTTTTGGTGATGGAAGTGGCCACAATCAAGATAATACTATTCTGTATCACACAAACTGTTCTCATAGGGGTTGCCTTCCAAGGTACCTGCAAGACTGTCTTGGAATCCATCATCTTTGTCTTCATCATGCACCCTTTTGATATTGGAGACCGCTGCATGATTGTGGAAGAGATGAATATCTTGACAACAGTGTTTCTTCGATATGACAATGAGAAAATATACTACCCCAATGCAGTTTTGCTCAATAAGCCAATAAGCAATTTCTATAGGAGTCCAGAGATGTCTGATGCAATTGATTTCACCATTGACGTGACTACTCCCATGGAGACTATCATTGCACTCAAGAAAATCAATACAAATAGCAAGCCAAAATATTGGAATCCAAAGCACACTGTGATAGCAAAACAAATAGATAACGTGGACAAGTTGAAGTTGTGTTTATGTGTGCAACACACCATCAACCATCAAAACTATGGTGAGCGAAGCATTAGGATATCGGAGCTCCTAATGGAGCTAAAAAAGATCTTTGAGATCCATGGTGTCAAGTACCATCTTCTTCCTCAAGAAATCCACCTTACCCAAATTATTGGAAATGGGAGAGTTCCATTTCAATCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00346	18334	26881	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000346s00018171.1	PF00924.13	MS_channel	452	648	6.00E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.358
SRR1783600	control	2.232
SRR1783602	moderate drought stress	0.738
SRR1811619	moderate drought stress	0.634

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.353
DRR006520	Root Summer glycyrrhizin high producing strain	0.362
DRR006521	Root Winter glycyrrhizin high producing strain	0.055
DRR006522	Root Winter glycyrrhizin high producing strain	0.053
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.945
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.808

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.005
SRR2868004	Drought Stress (root)	6.100
SRR2967015	Control (root)	3.889

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.760
SRR9715740	Leaf	0.594
SRR9715741	Leaf	2.047
SRR9715739	Root	1.211
SRR9715742	Root	3.131
SRR9715743	Root	3.164

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.705
SRR8400027	Control - Root	2.414